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scnpilot_p_inoc_scaffold_2631

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2631_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..229
DNA (228bp) protein (76aa)
RNAse E (EC:3.1.4.-); K08300 ribonuclease E [EC:3.1.26.12] id=12493113 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RNAse E (EC:3.1.4.-)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=292415 species="Bacteria; Proteobacteria; Bet
scnpilot_p_inoc_scaffold_2631_2
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(314..721)
DNA (408bp) protein (136aa)
cytochrome c; K08738 cytochrome c id=12493114 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Cytochrome C {ECO:0000313|EMBL:KDP87712.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
cytochrome c
scnpilot_p_inoc_scaffold_2631_3
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(718..1317)
DNA (600bp) protein (200aa)
hypothetical protein id=12493115 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC22101.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (s
scnpilot_p_inoc_scaffold_2631_4
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1406..2122)
DNA (717bp) protein (239aa)
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12493116 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
ECF family RNA polymerase sigma factor
scnpilot_p_inoc_scaffold_2631_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2277..2771)
DNA (495bp) protein (165aa)
protein tyrosine phosphatase (EC:3.1.3.48); K01104 protein-tyrosine phosphatase [EC:3.1.3.48] id=12493117 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
protein tyrosine phosphatase (EC:3.1.3.48); K01104 protein-tyrosine phosphatase [EC:3.1.3.48] Tax=GWE1_Thiobacillus_62_9_curated
protein tyrosine phosphatase (EC:3.1.3.48)
scnpilot_p_inoc_scaffold_2631_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2764..4863)
DNA (2100bp) protein (700aa)
excinuclease ABC subunit B n=1 Tax=Thiobacillus thioparus RepID=UPI0003794EB7
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=GWE1_Thiobacillus_62_9_curated
excinuclease ABC subunit B
scnpilot_p_inoc_scaffold_2631_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4865..6058
DNA (1194bp) protein (398aa)
aminotransferase (EC:2.6.1.-); K00812 aspartate aminotransferase [EC:2.6.1.1] id=12493120 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
aminotransferase (EC:2.6.1.-); K00812 aspartate aminotransferase [EC:2.6.1.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
aminotransferase (EC:2.6.1.-)
scnpilot_p_inoc_scaffold_2631_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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6089..7387
DNA (1299bp) protein (433aa)
cyclic nucleotide-binding domain-containing protein; K07058 membrane protein id=12493121 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
cyclic nucleotide-binding domain-containing protein; K07058 membrane protein Tax=GWE1_Thiobacillus_62_9_curated
cyclic nucleotide-binding protein
scnpilot_p_inoc_scaffold_2631_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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7406..8734
DNA (1329bp) protein (443aa)
DNA-directed DNA polymerase (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] id=12493122 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
DNA-directed DNA polymerase (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] Tax=GWE1_Thiobacillus_62_9_curated
DNA-directed DNA polymerase (EC:2.7.7.7)
scnpilot_p_inoc_scaffold_2631_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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8864..9385
DNA (522bp) protein (174aa)
superoxide dismutase, Cu-Zn (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] id=12493123 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
superoxide dismutase, Cu-Zn (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
superoxide dismutase, Cu-Zn (EC:1.15.1.1)
scnpilot_p_inoc_scaffold_2631_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9395..9748
DNA (354bp) protein (118aa)
hypothetical protein id=12493124 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
hypothetical protein
scnpilot_p_inoc_scaffold_2631_12
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9818..10432)
DNA (615bp) protein (205aa)
putative uncharacterized protein
Uncharacterized protein id=12493125 bin=THIO_HI species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
Uncharacterized protein {ECO:0000313|EMBL:BAP87533.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
scnpilot_p_inoc_scaffold_2631_13

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comp(10473..12023)
DNA (1551bp) protein (517aa)
putative phosphoketolase (EC:4.1.2.22); K01632 fructose-6-phosphate phosphoketolase [EC:4.1.2.22] id=12493126 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Putative phosphoketolase {ECO:0000313|EMBL:CBI10726.1}; EC=4.1.2.- {ECO:0000313|EMBL:CBI10726.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine dra
putative phosphoketolase (EC:4.1.2.22)
Displaying 13 items

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