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SCNpilot_P_inoc_Thiobacillus_63_16_multi

SCNpilot_P_inoc_Hydrogenophilales_63_16
In projects: SCNpilot_P_inoc

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

fragmented, some high-coverage core genes included.

Displaying items 1-50 of 258 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_18051
Genus: Thauera (50%)
8 4557 bp 71.69 6.29 98.49
scnpilot_p_inoc_scaffold_11130
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 4345 bp 67.69 14.33 95.70
scnpilot_p_inoc_scaffold_12193
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 4074 bp 67.45 49.26 96.10
scnpilot_p_inoc_scaffold_9336
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
6 4918 bp 67.24 9.70 100.65
scnpilot_p_inoc_scaffold_9075
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (80%)
5 5027 bp 66.94 13.28 97.87
scnpilot_p_inoc_scaffold_11188
Class: Betaproteobacteria (100%)
5 4330 bp 66.93 10.25 91.32
scnpilot_p_inoc_scaffold_5692
Class: Betaproteobacteria (62.5%)
8 6955 bp 66.93 11.02 97.44
scnpilot_p_inoc_scaffold_6934
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (75%)
4 6054 bp 66.88 13.97 96.48
scnpilot_p_inoc_scaffold_3802
Class: Betaproteobacteria (72.73%)
11 9107 bp 66.76 8.38 85.55
scnpilot_p_inoc_scaffold_2876
Phylum: Proteobacteria (77.78%)
9 11126 bp 66.75 6.12 96.56
scnpilot_p_inoc_scaffold_10141
Order: Hydrogenophilales (50%)
6 4653 bp 66.54 9.51 93.17
scnpilot_p_inoc_scaffold_2380
Class: Betaproteobacteria (77.78%)
9 12995 bp 66.33 8.78 98.16
scnpilot_p_inoc_scaffold_11346
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 4287 bp 66.25 8.54 97.97
scnpilot_p_inoc_scaffold_8151
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
6 5407 bp 66.21 18.64 93.32
scnpilot_p_inoc_scaffold_10719
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 5035 bp 66.16 13.17 97.95
scnpilot_p_inoc_scaffold_10528
Class: Betaproteobacteria (50%)
4 4528 bp 66.10 27.99 88.71
scnpilot_p_inoc_scaffold_9072
Order: Hydrogenophilales (100%)
3 5028 bp 66.09 11.01 90.75
scnpilot_p_inoc_scaffold_4123
Order: Hydrogenophilales (66.67%)
6 8626 bp 66.07 8.68 97.48
scnpilot_p_inoc_scaffold_9979
Species: GWE1_Thiobacillus_62_9_curated (60%)
5 4710 bp 65.99 11.27 94.46
scnpilot_p_inoc_scaffold_7258
Species: Thiobacillus denitrificans (66.67%)
6 5876 bp 65.98 51.08 93.94
scnpilot_p_inoc_scaffold_11006
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 4382 bp 65.97 10.24 93.18
scnpilot_p_inoc_scaffold_5408
Species: GWE1_Thiobacillus_62_9_curated (50%)
6 7208 bp 65.91 12.03 97.68
scnpilot_p_inoc_scaffold_11489
Species: Thiobacillus denitrificans (50%)
4 4247 bp 65.88 8.48 93.45
scnpilot_p_inoc_scaffold_11719
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 4187 bp 65.82 8.88 97.80
scnpilot_p_inoc_scaffold_7654
Order: Hydrogenophilales (100%)
6 5671 bp 65.74 12.83 92.84
scnpilot_p_inoc_scaffold_12158
Order: Hydrogenophilales (100%)
5 4085 bp 65.73 12.63 97.23
scnpilot_p_inoc_scaffold_6675
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
6 6224 bp 65.73 10.60 96.59
scnpilot_p_inoc_scaffold_6085
Species: Thiobacillus denitrificans (50%)
6 6634 bp 65.72 11.51 94.51
scnpilot_p_inoc_scaffold_1198
Species: Acidovorax sp. JS42 (66.67%)
27 25180 bp 65.71 13.67 87.74
scnpilot_p_inoc_scaffold_7104
Genus: Rubrivivax (50%)
8 5959 bp 65.68 16.61 94.55
scnpilot_p_inoc_scaffold_4255
Order: Hydrogenophilales (100%)
9 8459 bp 65.66 22.82 94.98
scnpilot_p_inoc_scaffold_3075
Order: Hydrogenophilales (100%)
14 10575 bp 65.60 11.35 96.03
scnpilot_p_inoc_scaffold_1502
Order: Hydrogenophilales (87.5%)
16 19796 bp 65.43 22.16 94.35
scnpilot_p_inoc_scaffold_3818
Order: Hydrogenophilales (77.78%)
9 9072 bp 65.38 37.78 92.56
scnpilot_p_inoc_scaffold_9968
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 4712 bp 65.34 10.51 94.42
scnpilot_p_inoc_scaffold_2435
Order: Hydrogenophilales (100%)
13 12760 bp 65.33 25.64 95.34
scnpilot_p_inoc_scaffold_8855
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (66.67%)
6 5116 bp 65.27 10.03 90.83
scnpilot_p_inoc_scaffold_11032
Order: Hydrogenophilales (87.5%)
8 4376 bp 65.27 9.91 87.61
scnpilot_p_inoc_scaffold_10474
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 4548 bp 65.26 8.51 93.01
scnpilot_p_inoc_scaffold_11914
Order: Hydrogenophilales (100%)
6 4142 bp 65.23 11.37 92.85
scnpilot_p_inoc_scaffold_25454 3 4025 bp 65.22 64.25 88.62
scnpilot_p_inoc_scaffold_3022
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (77.78%)
9 10688 bp 65.21 24.14 91.45
scnpilot_p_inoc_scaffold_4061
Species: GWE1_Thiobacillus_62_9_curated (57.14%)
7 8704 bp 65.21 17.89 98.51
scnpilot_p_inoc_scaffold_6219
Order: Hydrogenophilales (55.56%)
9 6530 bp 65.19 10.22 101.62
scnpilot_p_inoc_scaffold_10647
Order: Hydrogenophilales (80%)
5 4492 bp 65.12 8.85 94.57
scnpilot_p_inoc_scaffold_4271
Order: Hydrogenophilales (77.78%)
9 8440 bp 65.11 52.50 92.81
scnpilot_p_inoc_scaffold_9160
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 5361 bp 65.10 14.77 99.27
scnpilot_p_inoc_scaffold_5919
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (70%)
10 6762 bp 64.97 14.82 85.23
scnpilot_p_inoc_scaffold_1556
Species: GWE1_Thiobacillus_62_9_curated (50%)
14 19066 bp 64.95 10.83 92.44
scnpilot_p_inoc_scaffold_1548
Species: Acidovorax sp. JS42 (65.38%)
26 19216 bp 64.94 14.53 92.89
Displaying items 1-50 of 258 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.