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scnpilot_p_inoc_scaffold_2571_1

Organism: SCNpilot_P_inoc_Burkholderiales_67_12

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: 1..405

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Co similarity UNIPROT
DB: UniProtKB
  • Identity: 97.8
  • Coverage: 134.0
  • Bit_score: 260
  • Evalue 1.70e-66
RpoD family RNA polymerase sigma factor id=12552317 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 97.8
  • Coverage: 135.0
  • Bit_score: 259
  • Evalue 2.70e-66
RNA polymerase sigma-70 subunit RpoD similarity KEGG
DB: KEGG
  • Identity: 97.8
  • Coverage: 134.0
  • Bit_score: 258
  • Evalue 9.80e-67

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Taxonomy

Comamonas aquatica → Comamonas → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 405
TCCGTGCTGGCCGAGAAGATGGAGATCCCCGAGGACAAGATCCGCAAGATCATGAAGATCGCCAAGGAGCCGATCTCCATGGAAACGCCCATCGGCGACGACGACGACAGCCACCTGGGCGACTTCATCGAGGACAGCGCCAACACCGCGCCCGTGGACGCCGCCATGCAGGCCGGCCTGCGCGACGTGGTCAAGGACATCCTCGACGGCCTCACGCCGCGCGAAGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGTCCACCGACCACACGCTGGAGGAAGTGGGCAAGCAGTTCGACGTGACGCGCGAACGCATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGTTGAAGCACCCCAGCCGCAGCGACAAGCTGCGCAGCTTCATCGACTCGCTGTAA
PROTEIN sequence
Length: 135
SVLAEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSANTAPVDAAMQAGLRDVVKDILDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDSL*