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scnpilot_p_inoc_scaffold_300

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Displaying items 1-30 of 105 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_300_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(179..895)
DNA (717bp) protein (239aa)
cAMP-binding protein n=1 Tax=Variovorax sp. CF313 RepID=J2KTQ9_9BURK
cAMP-binding protein {ECO:0000313|EMBL:EJL76423.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, Crp/Fnr family
scnpilot_p_inoc_scaffold_300_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1146..2132
DNA (987bp) protein (329aa)
acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha n=1 Tax=Marinobacterium rhizophilum RepID=UPI00037C721E rbh
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha {ECO:0000313|EMBL:EZQ15755.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae;
acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha
scnpilot_p_inoc_scaffold_300_3
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2183..3235
DNA (1053bp) protein (351aa)
Acetoin dehydrogenase E1 component beta-subunit {ECO:0000313|EMBL:ELS25093.1}; EC=1.2.4.- {ECO:0000313|EMBL:ELS25093.1};; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomo
Acetoin dehydrogenase E1 component beta-subunit n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MGH6_PSEPS rbh
pyruvate dehydrogenase subunit beta
scnpilot_p_inoc_scaffold_300_4
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3239..3469
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8ME50_PSEPS
Uncharacterized protein {ECO:0000313|EMBL:ELS25094.1}; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseu
hypothetical protein
scnpilot_p_inoc_scaffold_300_5
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3486..5924)
DNA (2439bp) protein (813aa)
Serine/threonine protein kinase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BXD4_9BURK
Serine/threonine protein kinase {ECO:0000313|EMBL:EHL22981.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp.
serine/threonine protein kinase
scnpilot_p_inoc_scaffold_300_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5986..6864)
DNA (879bp) protein (293aa)
Fe-S protein n=1 Tax=Variovorax paradoxus RepID=UPI000360D3F1
MOSC domain-containing protein
MOSC domain-containing protein {ECO:0000313|EMBL:AGU51852.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax par
scnpilot_p_inoc_scaffold_300_7
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6916..8067
DNA (1152bp) protein (384aa)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC:1.14.13.-)
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000313|EMBL:ABM43732.1}; EC=1.14.13.- {ECO:0000313|EMBL:ABM43732.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacter
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WBV7_ACISJ
scnpilot_p_inoc_scaffold_300_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8105..8830
DNA (726bp) protein (242aa)
Disulfide bond isomerase, DsbC/G-like protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR15_ALIDB
disulfide bond isomerase, dsbc/g-like protein
Disulfide bond isomerase, DsbC/G {ECO:0000313|EMBL:AEB86172.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;
scnpilot_p_inoc_scaffold_300_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8914..10716
DNA (1803bp) protein (601aa)
peptidase M61 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036A10C8
Predicted protease with the C-terminal PDZ domain {ECO:0000313|EMBL:GAD23779.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sou
peptidase m61 domain-containing protein
scnpilot_p_inoc_scaffold_300_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10769..11548
DNA (780bp) protein (260aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TR17_ALIDB
enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO24919.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1
scnpilot_p_inoc_scaffold_300_11
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11767..12570
DNA (804bp) protein (268aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; EC=3.4
Peptidase M15D, vanX D-ala-D-ala dipeptidase n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J6N0_COMT2 rbh
peptidase M15D, vanX D-ala-D-ala dipeptidase
scnpilot_p_inoc_scaffold_300_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12639..13943)
DNA (1305bp) protein (435aa)
Sulfate adenylyltransferase subunit 1 (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|SAAS:SAAS00056000, ECO:0000313|EMBL:CDM23095.1}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055979, ECO:0000313|EMBL:CDM23095.1};; TaxID=1437824 species="Bac
Sulfate adenylyltransferase subunit 1 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUW2_PUSST rbh
scnpilot_p_inoc_scaffold_300_13
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13943..14857)
DNA (915bp) protein (305aa)
Sulfate adenylyltransferase subunit 2 (EC:2.7.7.4)
Sulfate adenylyltransferase {ECO:0000256|SAAS:SAAS00055732}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055732, ECO:0000313|EMBL:CDM23094.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacter
Sulfate adenylyltransferase subunit 2 n=3 Tax=Bordetella bronchiseptica RepID=K0MVU2_BORBM
scnpilot_p_inoc_scaffold_300_14
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14875..15780)
DNA (906bp) protein (302aa)
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] (EC:1.8.4.10 1.8.4.8)
Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] {ECO:0000313|EMBL:CDM23093.1}; EC=1.8.4.10 {ECO:0000313|EMBL:CDM23093.1};; EC=1.8.4.8 {ECO:0000313|EMBL:CDM23
Adenylylsulfate reductase, thioredoxin dependent n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X9N5_9BURK
scnpilot_p_inoc_scaffold_300_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15792..17219)
DNA (1428bp) protein (476aa)
Siroheme synthase / Precorrin-2 oxidase / Sirohydrochlorin ferrochelatase / Uroporphyrinogen-III methyltransferase (EC:1.3.1.76 2.1.1.107 4.99.1.4)
Siroheme synthase / Precorrin-2 oxidase / Sirohydrochlorin ferrochelatase / Uroporphyrinogen-III methyltransferase {ECO:0000313|EMBL:CDM23407.1}; EC=1.3.1.76 {ECO:0000313|EMBL:CDM23407.1};; EC=2.1.1.1
Siroheme synthase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=CYSG_BORPD
scnpilot_p_inoc_scaffold_300_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17195..18874)
DNA (1680bp) protein (560aa)
Sulfite reductase [NADPH] hemoprotein beta-component {ECO:0000256|HAMAP-Rule:MF_01540}; Short=SiR-HP {ECO:0000256|HAMAP-Rule:MF_01540};; Short=SiRHP {ECO:0000256|HAMAP-Rule:MF_01540};; EC=1.8.1.2 {ECO
Sulfite reductase [NADPH] hemoprotein beta-component n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Z7_9GAMM
sulfite reductase
scnpilot_p_inoc_scaffold_300_17
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18947..20788)
DNA (1842bp) protein (614aa)
Sulfite reductase [NADPH] flavoprotein alpha-component {ECO:0000256|PIRNR:PIRNR000207, ECO:0000256|SAAS:SAAS00014038}; Short=SiR-FP {ECO:0000256|PIRNR:PIRNR000207};; EC=1.8.1.2 {ECO:0000256|PIRNR:PIRN
Sulfite reductase [NADPH] flavoprotein alpha-component n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GV72_PUSST rbh
sulfite reductase flavoprotein
scnpilot_p_inoc_scaffold_300_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20986..21369)
DNA (384bp) protein (128aa)
nitrite reductase (NAD(P)H) small subunit; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4] id=12553848 bin=BDI species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
nitrite reductase (NAD(P)H) small subunit; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
nitrite reductase (NAD(P)H) small subunit
scnpilot_p_inoc_scaffold_300_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21455..23938)
DNA (2484bp) protein (828aa)
Nitrite reductase (NAD(P)H), large subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQ84_ALIDB rbh
nitrite reductase (nad(p)h), large subunit rbh
Nitrite reductase (NAD(P)H), large subunit {ECO:0000313|EMBL:ADV00126.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source=
scnpilot_p_inoc_scaffold_300_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24141..25223)
DNA (1083bp) protein (361aa)
Sulfate and thiosulfate import ATP-binding protein CysA (EC:3.6.3.25)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000256|HAMAP-Rule:MF_01701}; EC=3.6.3.25 {ECO:0000256|HAMAP-Rule:MF_01701, ECO:0000313|EMBL:CDM24470.1};; Sulfate-transporting ATPase {ECO:000
Sulfate/thiosulfate import ATP-binding protein CysA n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DVX8_9BURK
scnpilot_p_inoc_scaffold_300_21
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25220..26059)
DNA (840bp) protein (280aa)
Sulfate ABC transporter permease (Fragment) n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2HTJ8_9BURK
Sulfate transport system permease protein CysW
Sulfate transport system permease protein CysW {ECO:0000313|EMBL:CDM24471.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" so
scnpilot_p_inoc_scaffold_300_22
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26056..26919)
DNA (864bp) protein (288aa)
Sulfate ABC transporter, permease protein CysT n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GS59_PUSST
Sulfate transport system permease protein CysT
Sulfate transport system permease protein CysT {ECO:0000313|EMBL:CDM24472.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" so
scnpilot_p_inoc_scaffold_300_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26928..27911)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003181A42
Sulfate and thiosulfate binding protein CysP
Sulfate and thiosulfate binding protein CysP {ECO:0000313|EMBL:CDM24473.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
scnpilot_p_inoc_scaffold_300_24
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28055..28522)
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q9F7_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44764.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (str
scnpilot_p_inoc_scaffold_300_25
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28635..29687
DNA (1053bp) protein (351aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
tRNA-dihydrouridine synthase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF73_ACIET
tim-barrel protein, nifr3 family
scnpilot_p_inoc_scaffold_300_26
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29684..29923
DNA (240bp) protein (80aa)
DNA-binding protein Fis n=2 Tax=Acidovorax RepID=A1TKK5_ACIAC
DNA-binding protein Fis
DNA-binding protein Fis {ECO:0000313|EMBL:ABM31493.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (s
scnpilot_p_inoc_scaffold_300_27
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30012..31613
DNA (1602bp) protein (534aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase (EC:2.1.2.3)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF71_ACIET
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Com
scnpilot_p_inoc_scaffold_300_28
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31552..32532
DNA (981bp) protein (327aa)
Putative amino-acid metabolite efflux pump n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HKU4_RUBGI
putative amino-acid metabolite efflux pump
Putative amino-acid metabolite efflux pump {ECO:0000313|EMBL:BAL93631.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatino
scnpilot_p_inoc_scaffold_300_29
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32562..33872)
DNA (1311bp) protein (437aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, EC
glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000370E6E9
glutamate-1-semialdehyde-2,1-aminomutase
scnpilot_p_inoc_scaffold_300_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34126..34530
DNA (405bp) protein (135aa)
Response regulator receiver protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF65_ACIET
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:AEB86205.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicyc
Displaying items 1-30 of 105 in total

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