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scnpilot_p_inoc_scaffold_1633

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1633_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1281
DNA (1281bp) protein (427aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39); K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] Tax=GWE1_Thiobacillus_62_9_curated
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain id=1331605 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scnpilot_p_inoc_scaffold_1633_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1377..1733
DNA (357bp) protein (119aa)
cbbS; ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (type I) small subunit (CbbS) (EC:4.1.1.39); K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] Tax=GWE1_Thiobacillus_62_
cbbS; ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (type I) small subunit (CbbS) (EC:4.1.1.39)
Ribulose 1,5-bisphosphate carboxylase/oxygenase, RuBisCO (Type I) small subunit (CbbS) id=1331604 bin=GWE1_T_denit_62_9 species=Cupriavidus metallidurans genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
scnpilot_p_inoc_scaffold_1633_3
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1954..2757
DNA (804bp) protein (268aa)
ATPase AAA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F41AB rbh
cbbQ; Rubisco activation protein
Rubisco activation protein {ECO:0000313|EMBL:ABF08382.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metall
scnpilot_p_inoc_scaffold_1633_4
unknown

Not on your lists

comp(2951..3199)
DNA (249bp) protein (83aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1633_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3316..5040
DNA (1725bp) protein (575aa)
Rubisco activation protein CbbO id=1331602 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cbbO1; rubisco activation protein CbbO Tax=GWE1_Thiobacillus_62_9_curated
cbbO1; rubisco activation protein CbbO
scnpilot_p_inoc_scaffold_1633_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5050..5346
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LN96_RALME
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1633_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5355..6995)
DNA (1641bp) protein (547aa)
Sulfate permease, SulP family id=1331596 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
SulP family sulfate permease; K03321 sulfate permease, SulP family Tax=GWE1_Thiobacillus_62_9_curated
SulP family sulfate permease
scnpilot_p_inoc_scaffold_1633_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7005..7565)
DNA (561bp) protein (187aa)
hypothetical protein id=12494918 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1633_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7659..8750)
DNA (1092bp) protein (364aa)
hypothetical protein; K07090 id=12494919 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K07090 Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1633_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8781..9095)
DNA (315bp) protein (105aa)
Putative uncharacterized protein id=1331592 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1633_11
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9133..9507)
DNA (375bp) protein (125aa)
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
scnpilot_p_inoc_scaffold_1633_12
unknown

Not on your lists

comp(9507..9695)
DNA (189bp) protein (63aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1633_13
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9849..11297
DNA (1449bp) protein (483aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035FABFC
integral membrane sensor signal transduction histidine kinase Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
sensory transduction protein kinase
scnpilot_p_inoc_scaffold_1633_14
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11294..12646
DNA (1353bp) protein (451aa)
nitrogen regulation protein NR(I) n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B7355
response regulator HsfA Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
response regulator HsfA
scnpilot_p_inoc_scaffold_1633_15
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12746..14881
DNA (2136bp) protein (712aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037269B4 rbh
sulfate transporter Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
sulfate transporter
scnpilot_p_inoc_scaffold_1633_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15192..15893
DNA (702bp) protein (234aa)
Two component Transcriptional regulator, Winged helix family id=1331591 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
two component transcriptional regulator Tax=GWE1_Thiobacillus_62_9_curated
two component transcriptional regulator
scnpilot_p_inoc_scaffold_1633_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15883..17148
DNA (1266bp) protein (422aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales
Periplasmic Sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFP3_THIDA rbh
periplasmic sensor signal transduction histidine kinase
scnpilot_p_inoc_scaffold_1633_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17232..19043
DNA (1812bp) protein (604aa)
sulfate anion transporter Tax=GWE1_Thiobacillus_62_9_curated
Sulphate anion transporter id=1329447 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
sulfate anion transporter
scnpilot_p_inoc_scaffold_1633_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19036..19521
DNA (486bp) protein (162aa)
Putative uncharacterized protein id=1329448 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1633_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19525..19953)
DNA (429bp) protein (143aa)
hypothetical protein id=12494924 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1633_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20065..20436
DNA (372bp) protein (124aa)
thioredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI0003722ADA
putative thioredoxin-like protein Tax=GWE1_Thiobacillus_62_9_curated
thioredoxin-like protein
scnpilot_p_inoc_scaffold_1633_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20429..20911
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371010D
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1633_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20924..21265)
DNA (342bp) protein (114aa)
LysR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI000382A5F5
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA Tax=GWE1_Thiobacillus_62_9_curated
LysR family transcriptional regulator
Displaying 23 items

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