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scnpilot_p_inoc_scaffold_24_414

Organism: SCNpilot_P_inoc_Stenotrophomonas_69_27

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: 448246..448875

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036222A5 similarity UNIREF
DB: UNIREF100
  • Identity: 74.6
  • Coverage: 173.0
  • Bit_score: 257
  • Evalue 9.30e-66
RNA polymerase sigma factor nccH {ECO:0000313|EMBL:CCP15388.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomo similarity UNIPROT
DB: UniProtKB
  • Identity: 72.3
  • Coverage: 173.0
  • Bit_score: 238
  • Evalue 8.10e-60
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 71.8
  • Coverage: 174.0
  • Bit_score: 237
  • Evalue 2.80e-60

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Taxonomy

Stenotrophomonas maltophilia → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 630
ATGCTTCCCGCCGGCGCCGTGCTGCGTACACTCTCCGGCACACTTCGCTTCCGGATACTCCGACTGTCCGCTTCCCGTGCCCCGGTCGATGGCGTCACGCGCGCCCCTGCCGGCGATGGCTTCTCGCTGTTCCTGCGCACGCAGCGCGAGCCGCTGCGCGTCTTCCTGCGCGCGCGCGGCGCCAGTGAGGAGGACGCCGAGGACATCGTGCAGGACTGCATGGAGCGGCTGATCCGCTACCGCGAGCATCCGCACGCGGAACTGAAACTGCTGCTGTACCGGATCGCGCGCAACCGCCTGGCCGACCGCGGCCGCTCGCCACACGCCGCGCCGCACCTGCCACTGGCCGAACAGGACCTGCCGAGCGAAGCGCCGTTCTCCACGCCCGGGCCGCTGCGCCAGGCCGAATCGGGACAGATGCTCAACGCCCTGCGCCAGGCGCTGCTGAAACTGCCCGAGCGCTGCCGCGAGGTCTACCTGCTCAACCGCATCACCGGCATGAGCTACAGCCAGATCGCCCGCCACCGCGGCATCACCGCCAAGACCGTGGAAAAGCACGTCGCGCGTGCGCTGCAGGGGCTGCGCCGGGAACTGGGGGCCGACGCGTTCGGCATGGGCGGGGACGAATGA
PROTEIN sequence
Length: 210
MLPAGAVLRTLSGTLRFRILRLSASRAPVDGVTRAPAGDGFSLFLRTQREPLRVFLRARGASEEDAEDIVQDCMERLIRYREHPHAELKLLLYRIARNRLADRGRSPHAAPHLPLAEQDLPSEAPFSTPGPLRQAESGQMLNALRQALLKLPERCREVYLLNRITGMSYSQIARHRGITAKTVEKHVARALQGLRRELGADAFGMGGDE*