ggKbase home page

scnpilot_p_inoc_scaffold_454

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_454_1
unknown

Not on your lists

comp(3..68)
DNA (66bp) protein (22aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_454_2
unknown

Not on your lists

723..1316
DNA (594bp) protein (198aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_454_3
unknown

Not on your lists

comp(1386..1625)
DNA (240bp) protein (80aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_454_4
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1798..2241)
DNA (444bp) protein (148aa)
Thioesterase superfamily protein n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TVL0_MARTH
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ADR21123.1}; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (str
scnpilot_p_inoc_scaffold_454_5
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(2256..2870)
DNA (615bp) protein (205aa)
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Methylmalonyl-CoA epimerase n=1 Tax=Myroides odoratimimus CCUG 3837 RepID=K1HB88_9FLAO
methylmalonyl-CoA/ethylmalonyl-CoA epimerase
scnpilot_p_inoc_scaffold_454_6
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2872..4875
DNA (2004bp) protein (668aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synt
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000380677D
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
scnpilot_p_inoc_scaffold_454_7
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4888..5307
DNA (420bp) protein (140aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169,
3-dehydroquinate dehydratase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFB57
3-dehydroquinate dehydratase
scnpilot_p_inoc_scaffold_454_8
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6237..7670)
DNA (1434bp) protein (478aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUC5_CHIPD
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ACU59165.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chi
scnpilot_p_inoc_scaffold_454_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7830..9287
DNA (1458bp) protein (486aa)
Arginine deiminase {ECO:0000313|EMBL:AEV97363.1}; EC=3.5.3.6 {ECO:0000313|EMBL:AEV97363.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Nias
Arginine deiminase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGE0_NIAKG
arginine deiminase
scnpilot_p_inoc_scaffold_454_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

9342..10262
DNA (921bp) protein (307aa)
Amidinotransferase n=1 Tax=Niabella soli DSM 19437 RepID=H1NP41_9SPHI
hypothetical protein Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
amidinotransferase
scnpilot_p_inoc_scaffold_454_11
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10266..10574
DNA (309bp) protein (103aa)
Thioredoxin n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11VE1_CYTH3
trxA; thioredoxin C-2
Thioredoxin {ECO:0000313|EMBL:ABG58625.1}; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIM
scnpilot_p_inoc_scaffold_454_12
unknown

Not on your lists

comp(10721..11164)
DNA (444bp) protein (148aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_454_13
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11391..15011)
DNA (3621bp) protein (1207aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinop
DNA polymerase III, alpha subunit n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKT0_CHIPD
DNA polymerase III subunit alpha
scnpilot_p_inoc_scaffold_454_14
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(15175..16080)
DNA (906bp) protein (302aa)
Peptidase M54, archaemetzincin n=1 Tax=Rhodopirellula sp. SWK7 RepID=M5SZ43_9PLAN
Zn-dependent protease Tax=RBG_16_Planctomycetes_64_12_curated
hypothetical protein
scnpilot_p_inoc_scaffold_454_15
Weeksella virosa, Weeksella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16141..17067)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) RepID=F0NY44_WEEVC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX67035.1}; TaxID=865938 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Weeksella.;" source="Weeksella virosa (strain
scnpilot_p_inoc_scaffold_454_16
unknown

Not on your lists

comp(17092..17466)
DNA (375bp) protein (125aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_454_17
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17588..18541
DNA (954bp) protein (318aa)
UbiA prenyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PC71_CHIPD
ubiA; prenyltransferase
UbiA prenyltransferase {ECO:0000313|EMBL:ACU59454.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinens
scnpilot_p_inoc_scaffold_454_18
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18507..19802)
DNA (1296bp) protein (432aa)
Glucose/galactose transporter n=1 Tax=Gillisia limnaea DSM 15749 RepID=H2BU78_9FLAO
Multiple antibiotic resistance (MarC)-related protein Tax=GWA2_Bacteroidetes_31_9_curated
Multiple antibiotic resistance (MarC)-related protein
scnpilot_p_inoc_scaffold_454_19
Draconibacterium orientale, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19965..21815
DNA (1851bp) protein (617aa)
hypothetical protein
BatD protein {ECO:0000313|EMBL:AHW60319.1}; TaxID=1168034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium orientale.;"
Uncharacterized protein id=3674631 bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
scnpilot_p_inoc_scaffold_454_20
unidentified eubacterium SCB49, Bacteroidetes, Bacteria

Not on your lists

21831..22931
DNA (1101bp) protein (367aa)
Putative uncharacterized protein n=1 Tax=unidentified eubacterium SCB49 RepID=A6ETI2_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EDM42993.1}; TaxID=50743 species="Bacteria; Bacteroidetes; environmental samples.;" source="unidentified eubacterium SCB49.;"
hypothetical protein
scnpilot_p_inoc_scaffold_454_21
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22933..24081
DNA (1149bp) protein (383aa)
Uncharacterized protein id=2532794 bin=GWF1_Flavobacteria_32_7 species=Bergeyella zoohelcum genus=Bergeyella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
hypothetical protein Tax=GWF1_Flavobacteria_32_7_curated
glycosyltransferase family 1
scnpilot_p_inoc_scaffold_454_22
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24074..24679
DNA (606bp) protein (202aa)
sugar transferase n=1 Tax=Empedobacter brevis RepID=UPI00036D0764
sugar transferase
Sugar transferase {ECO:0000313|EMBL:AFD55917.1}; TaxID=693978 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestifer (str
scnpilot_p_inoc_scaffold_454_23
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24666..25283
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI0003802336
Acetyltransferase {ECO:0000313|EMBL:AKC18229.1}; TaxID=96345 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophil
sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
scnpilot_p_inoc_scaffold_454_24
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25292..26425
DNA (1134bp) protein (378aa)
Putative PLP-dependent enzyme possibly involved in cell wall biogenesis n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KXQ3_SOLCM rbh
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
Putative PLP-dependent enzyme possibly involved in cell wall biogenesis {ECO:0000313|EMBL:AFD05468.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacte
scnpilot_p_inoc_scaffold_454_25
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26425..27051
DNA (627bp) protein (209aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1235802 species="Bacteria; Firmicutes; Clostri
Thymidylate kinase n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2AD03_9FIRM
thymidylate kinase
scnpilot_p_inoc_scaffold_454_26
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27046..28140)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J0RWB5_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJG03382.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp.
hypothetical protein
scnpilot_p_inoc_scaffold_454_27
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28216..29154)
DNA (939bp) protein (313aa)
FAD dependent oxidoreductase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP17_CHIPD
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACU58714.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga
scnpilot_p_inoc_scaffold_454_28
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(29295..31565)
DNA (2271bp) protein (757aa)
TonB-dependent receptor plug n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IG56_FLUTR
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
TonB-dependent receptor plug
scnpilot_p_inoc_scaffold_454_29
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(31657..33009)
DNA (1353bp) protein (451aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
Uncharacterized protein id=1790365 bin=GWE2_Bacteroidetes_42_24 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
scnpilot_p_inoc_scaffold_454_30
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33119..34255)
DNA (1137bp) protein (379aa)
rfaG; a-glycosyltransferase (EC:2.4.1.-); K00754 [EC:2.4.1.-] Tax=GWE2_Bacteroidetes_42_39_curated
A-glycosyltransferase, glycosyltransferase family 4 protein id=4251565 bin=GWF2_Bacteroidetes_42_66 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_42_66 organism_group=Bacteroidetes organism_desc=a73 rbh
a-glycosyltransferase
Displaying items 1-30 of 93 in total

View Taxonomy