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scnpilot_p_inoc_scaffold_92_93

Organism: SCNpilot_P_inoc_Sphingobacteriales_44_17

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 ASCG 13 / 38
Location: 106460..110782

Top 3 Functional Annotations

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Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 81.1
  • Coverage: 999.99
  • Bit_score: 2357
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUG7_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 81.1
  • Coverage: 999.99
  • Bit_score: 2357
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 81.1
  • Coverage: 999.99
  • Bit_score: 2357
  • Evalue 0.0

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 4323
ATGGCAATTAAAAAAGACAACCGTCCAAAATCAGGGTTCGACAAAATTACCATCAGTCTGGCTTCACCGGATGGTATTCTGGATCGCTCCTACGGAGAGGTTTTAAAACCTGAAACGATCAATTATCGTACTTACAAACCGGAACGTGACGGTCTTTTCTGTGAAAAGATCTTTGGTCCTGTCAAGGATTTCGAATGTTACTGCGGTAAGTACAAACGTATTCGCTACCGTGGTATTGTGTGTGACCGTTGTGGAGTAGAGGTGACGGAAAAGAAGGTACGTCGCGAGCGTATGGGCCACTTAAAGCTGGTAGTACCTGTCGTGCATATTTGGTATTTCAAATCATTGCCTAACAAAATAGGTTATCTGCTGGGTTGCAGCTCCAAAAAGCTGGAGAGCATCGTGTATTACGAACGTTACGTGATCATCCAGTCCGGGGAAGCGGAAGAGATGATCCGCCAGAAATTACAGATGAAGGATAGTGAAGATACTTATATGGCTTTATTATCTGAGGATGAATACCTGGATATCATTGATGCCCTTCCGAAGGAAAACCAGTACCTGCCGGATGAAGATCCCAATAAATTCGTGGCCAAGATGGGTGCGGAAGCCGTACACGATCTGCTGGGCCGCATCAACCTGGACCAGCTTTCTTACGAGCTGAGGAACTCTGCCGCCAATGAAACTTCCCAGCAACGCAAGCAGGAAGCGCTGAAACGCCTGAGCGTGGTGGAAGCCTTCCGGGAAGCCAATACACATATCGAAAACCGTCCTGAATGGATGGTCATGCAATATATCCCTGTGATCCCGCCGGAGCTTCGTCCCCTGGTACCCCTGGACGGCGGCCGTTTCGCATCTTCCGATCTGAACGACCTTTACCGCCGGGTGATCATCAGGAACAACCGCCTGAAAAGACTGCTGGAGATCAAAGCGCCGGAAGTCATCCTGCGTAACGAAAAACGGATGCTGCAGGAAGCTGTGGACTCCCTGTTTGACAACTCCCGTAAATCCAACGCTGTAAAAGCGGAAGGCGGCAGGGCGCTGAAATCCTTATCAGATGTATTAAAAGGTAAGCAGGGACGTTTCCGTCAGAACCTGCTGGGTAAACGTGTGGACTATTCCGGCCGTTCCGTTATCGTGGTAGGTCCTGAAATGGGACTGCATGAATGCGGTATCCCTAAAGATATGGCTGCGGAGCTGTTCAAGCCGTTCATCATCCGTAAGCTGATAGAAAGAGGCATTGTTAAAACCGTAAAATCGGCCAAGAAGCTGGTAGAAAGAAAAGAAGCGGTGGTATGGGATATCCTGGAAAATGTAATGAAAGGACACCCGGTACTGCTGAACCGTGCCCCGACGCTGCACAGGCTGTCTATCCAGGCCTTCCAGCCCCATATGATCGAAGGTAAGGCTATCCGCCTGCACCCGCTGGTATGTTCCGCGTTCAACGCCGACTTTGACGGTGACCAGATGGCGGTACACGTACCTTTGAGCAGCGCGGCTATCCTGGAAGCCCAGCTGCTGATGCTGGCTTCTCACAATATCCTGAACCCTCAGAACGGTACGCCTATCACCCTGCCTTCCCAGGACATGGTATTGGGGCTGTACTACCTGACAAAAGGAAAGAAAACCACTGCCGACGAAGTGATCAAAGGTGAAGGCAAGGCGTTCTATAATGCCAGTGAGGTAATCATTGCCCACAATGAGGGCAGGGTCGATCTTCACGCCTGGATCAAAGTGAAGGCTGATGTCCGTACCAAGGACGGCCGCCTGGAAAATAAGCTGATCGAAACAACTGTAGGCCGCGTCCTGTTCAACCAGGTAGTACCTAAGGACAATGGTTTCGTGAACGCATTGCTGACCAAAAAATCCTTAAGGGAGATCATCGGTGATATCCTGAAGAATACCAATATCCCTCAGACCGTAAAATTCCTGGACGATATCAAAACGCTGGGATTCCGTACGGCTTACAGGGGTGGTCTTTCCTTCAGCATCAATGACCTGACGATCCCTGAAGTAAAAGAAGAACTGATAGAAGATGCGCAAAGCGAAGTAGATGAGGTGTGGGATAACTATAATATGGGTCTGATCACCAATAACGAACGTTATAACCAGATCATTGACATCTGGTCACGTGTGGATACCCGTGTTACAGAAACGCTGATCTCTGAAATGGCATCCGACAAGCAGGGCTTCAACTCTGTATATATGATGCTGGACTCCGGTGCCCGTGGTTCCAAACAGCAGGTAAAGCAGCTGGCAGGCCTGAGGGGCCTGATGGCCAAGCCACGCCGTTCCGGCTCTACCGGCTCCGAGATCATCGAAAACCCGATCCTATCCAACTTCAAATCCGGTCTTTCGGTACTGGAATACTTCATTTCCACGCACGGTGCGCGTAAAGGTCTTGCGGATACCGCCCTTAAAACAGCGGATGCGGGTTACCTGACCCGTCGTCTGGTGGACGTTGCACAGGATGTGGTGATCAATGAAGAAGATTGCGGTACCCTGAGAGGTCTGGCTATTTCCGCATTAAAAGATAATGAAGAGATCGTTGAACCATTGTTCGACCGTATCCTCGGACGTGTGTCCCTGCATGATGTTTATGATCCTGTAACGGATGAGCTGCTGGTTACTTCCGGGGCTGAGATCACCGAAGATATCGCACAGGCTATCGAAGATGCCGGTGTGGAGACCGTTGAGATACGTTCCGTGCTGACCTGTGAAACCAAACGCGGATGCTGTTCCAAATGCTATGGTAAAAACCTGGCTACGGGCTATATGACACAACGCGGCGACGCCGTAGGTATCATCGCAGCCCAGTCCATAGGTGAGCCTGGTACCCAGCTTACACTGCGTACCTTCCACGTGGGTGGTGTGGCCGGTTCTTCCACCATCAACTCGCAGATGCTGTCCCGCTTTACCGGAACCGTACAGTTTGACGGCATCCGTACCACTAAGAGCGTAGACGAAGAGGGCAATGTAGTCAATGTGGTTATAGGACGTACCGGGGAGCTGAGGGTAATGGATGTGGAGAACGACAGGTTACTGACCACTCATAATATCCCTTACGGCTCTACCCTGAAGATACAGGACGGCCAGAAGATACAGAAGGGAGATGTGATCTGTACCTGGGATCCGTTCAACGCGGTTATCATCGCTGAGATTGACGGTAAAGTAGCTTTCGAAAGCATCAAAGAAGGTGTAACATACCGTGAGGAGACCGATGAGCAGACAGGACACACGGAAAAAGTAGTTATTGAAACAAAAGACAAGACAAAAATCCCGTCCATCCTGATAGAAGGAGAAGACGTGAAAACCTATAACCTTCCTGTGGGTGCCCACATCTCCGTATCTGAAGGGGAAAAGGTAAAATCAGGACAGATCCTCGTTAAGATACCACGTGTAATGGGCCGTGCAAGGGATATCACCGGAGGTCTGCCGCGCGTAACCGAGCTGTTTGAAGCCCGTAACCCGTCCAACCCTGCAGTAGTTGCAGAAATTGACGGTGTGGTTTCTTTCGGCAGCGTAAAACGCGGTAACCGTGAGATCATCGTGGAATCCAAAGAAGGACTGGTTCGCAAATACCTGGTGCCGCTGACCCGCCAGATCACAGTACAGGACGGTGACTTTATCAAAGCCGGTAATGCCTTATCAGACGGGCAGACCACGCCAAGCGATATCCTGAAGATCAAGGGACCTCACGCGGTGCAGGAGTACCTGGTGAACGAGATACAGGAAGTTTACCGCTTACAGGGTGTGAAGATCAATGATAAGCACATAGAGGTAATTGTCCGCCAGATGATGCGTAAAGTAACCATTATGGATCCGGGCGATACCAAATTCCTCGAAGACGATACCGTTGAAAGGATCGAGTTCATGGACGAAAACGACTTTATCTATGATAAGAAAGTGGTTATCGATTCAGGAGACAGTGAAAAAATGCACCCGGGACAGATCGTGACCCTGCGTGAGCTGAGAGAAGAGAACAGCGTGCTGAGAAGAATGGACAAAAAGCTGATCGAGTATCGTGATGCTCAGCCGGCCACTTCCGCTCCGCTGCTGTTAGGTATCACCAAAGCCTCCCTGGGTACACAAAGCTGGATATCCGCGGCTTCCTTCCAGGAAACAACCAAAGTGCTGTCCACAGCGGCTATTGCCGGTAAGACAGATAACCTGTTAGGCCTGAAGGAGAACGTGATCACCGGCGGACTGATCCCTGCAGGAACCGGAACCCGCAAGTTCCAGGATATGATCGTAGGCTCTAAAGATGAATATGAATTGCTGATGCAGAGCCAGGATGTGCTGCAGTTTGATGATGACGAATAA
PROTEIN sequence
Length: 1441
MAIKKDNRPKSGFDKITISLASPDGILDRSYGEVLKPETINYRTYKPERDGLFCEKIFGPVKDFECYCGKYKRIRYRGIVCDRCGVEVTEKKVRRERMGHLKLVVPVVHIWYFKSLPNKIGYLLGCSSKKLESIVYYERYVIIQSGEAEEMIRQKLQMKDSEDTYMALLSEDEYLDIIDALPKENQYLPDEDPNKFVAKMGAEAVHDLLGRINLDQLSYELRNSAANETSQQRKQEALKRLSVVEAFREANTHIENRPEWMVMQYIPVIPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLLEIKAPEVILRNEKRMLQEAVDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKRVDYSGRSVIVVGPEMGLHECGIPKDMAAELFKPFIIRKLIERGIVKTVKSAKKLVERKEAVVWDILENVMKGHPVLLNRAPTLHRLSIQAFQPHMIEGKAIRLHPLVCSAFNADFDGDQMAVHVPLSSAAILEAQLLMLASHNILNPQNGTPITLPSQDMVLGLYYLTKGKKTTADEVIKGEGKAFYNASEVIIAHNEGRVDLHAWIKVKADVRTKDGRLENKLIETTVGRVLFNQVVPKDNGFVNALLTKKSLREIIGDILKNTNIPQTVKFLDDIKTLGFRTAYRGGLSFSINDLTIPEVKEELIEDAQSEVDEVWDNYNMGLITNNERYNQIIDIWSRVDTRVTETLISEMASDKQGFNSVYMMLDSGARGSKQQVKQLAGLRGLMAKPRRSGSTGSEIIENPILSNFKSGLSVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVINEEDCGTLRGLAISALKDNEEIVEPLFDRILGRVSLHDVYDPVTDELLVTSGAEITEDIAQAIEDAGVETVEIRSVLTCETKRGCCSKCYGKNLATGYMTQRGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSSTINSQMLSRFTGTVQFDGIRTTKSVDEEGNVVNVVIGRTGELRVMDVENDRLLTTHNIPYGSTLKIQDGQKIQKGDVICTWDPFNAVIIAEIDGKVAFESIKEGVTYREETDEQTGHTEKVVIETKDKTKIPSILIEGEDVKTYNLPVGAHISVSEGEKVKSGQILVKIPRVMGRARDITGGLPRVTELFEARNPSNPAVVAEIDGVVSFGSVKRGNREIIVESKEGLVRKYLVPLTRQITVQDGDFIKAGNALSDGQTTPSDILKIKGPHAVQEYLVNEIQEVYRLQGVKINDKHIEVIVRQMMRKVTIMDPGDTKFLEDDTVERIEFMDENDFIYDKKVVIDSGDSEKMHPGQIVTLRELREENSVLRRMDKKLIEYRDAQPATSAPLLLGITKASLGTQSWISAASFQETTKVLSTAAIAGKTDNLLGLKENVITGGLIPAGTGTRKFQDMIVGSKDEYELLMQSQDVLQFDDDE*