ggKbase home page

scnpilot_p_inoc_scaffold_92

Search features with annotation key words

Displaying items 91-120 of 194 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_92_91
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

104072..105229
DNA (1158bp) protein (386aa)
Isopenicillin-N epimerase (EC:5.1.1.17); K04127 isopenicillin-N epimerase [EC:5.1.1.17] Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Isopenicillin-N epimerase (EC:5.1.1.17)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI00031952A2 rbh
scnpilot_p_inoc_scaffold_92_92
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

Not on your lists

105263..106144
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00036C6BAE
SAM-dependent methyltransferase
Tax=BJP_IG2102_Bacteroidetes_40_9
scnpilot_p_inoc_scaffold_92_93
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

106460..110782
DNA (4323bp) protein (1441aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUG7_CHIPD
DNA-directed RNA polymerase subunit beta'
scnpilot_p_inoc_scaffold_92_94
unknown

Not on your lists

comp(110795..110908)
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_92_95
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(111097..114078)
DNA (2982bp) protein (994aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00036B385D
Uncharacterized protein {ECO:0000313|EMBL:KGO84791.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium riv
cell wall/surface repeat-containing protein
scnpilot_p_inoc_scaffold_92_96
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

114345..114731
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035F514F
Globin {ECO:0000313|EMBL:KIC95486.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
globin family protein
scnpilot_p_inoc_scaffold_92_97
GWA2_Bacteroidetes_32_17_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(115055..116848)
DNA (1794bp) protein (598aa)
Lysyl endopeptidase (EC:3.4.21.50) Tax=GWA2_Bacteroidetes_32_17_curated
Lysyl endopeptidase id=5037218 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
extracellular protease
scnpilot_p_inoc_scaffold_92_98
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(116934..117698)
DNA (765bp) protein (255aa)
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036475D3
methyltransferase
scnpilot_p_inoc_scaffold_92_99
Cecembia lonarensis, Cecembia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(117701..118711)
DNA (1011bp) protein (337aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
o-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Cecembia lonarensis LW9 RepID=K1LFY7_9BACT
scnpilot_p_inoc_scaffold_92_100
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(118728..119468)
DNA (741bp) protein (247aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUD1_CHIPD
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:ACU59171.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitino
scnpilot_p_inoc_scaffold_92_101
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

119579..121972
DNA (2394bp) protein (798aa)
Surface antigen (D15) n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUD0_CHIPD rbh
surface antigen (D15) rbh
Surface antigen (D15) {ECO:0000313|EMBL:ACU59170.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensi
scnpilot_p_inoc_scaffold_92_102
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

122384..126235
DNA (3852bp) protein (1284aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YI59_9SPHI rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ26494.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mu
scnpilot_p_inoc_scaffold_92_103
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

126445..127020
DNA (576bp) protein (192aa)
Transcriptional regulator n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KRC1_SOLCM
TetR family transcriptional regulator Tax=GWB2_Ignavibacteria_35_6b_curated
transcriptional regulator
scnpilot_p_inoc_scaffold_92_104
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

127114..129492
DNA (2379bp) protein (793aa)
NAD-binding 3-hydroxyacyl-CoA dehydrogenase; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YGQ9_9SPHI rbh
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein
scnpilot_p_inoc_scaffold_92_105
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

129565..130740
DNA (1176bp) protein (392aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA C-acetyltransferase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VL31_9SPHI
acetyl-CoA acetyltransferase Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
scnpilot_p_inoc_scaffold_92_106
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

130800..132587
DNA (1788bp) protein (596aa)
Acyl-CoA dehydrogenase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KNM0_SOLCM rbh
acyl-CoA dehydrogenase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
acyl-CoA dehydrogenase
scnpilot_p_inoc_scaffold_92_107
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

132698..133939
DNA (1242bp) protein (414aa)
Long-chain fatty acid transport protein, outer membrane protein n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11PA9_CYTH3
Putative outer membrane protein {ECO:0000313|EMBL:GAL86778.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococc
fadL; long-chain fatty acid transport protein, outer membrane protein
scnpilot_p_inoc_scaffold_92_108
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

133976..135292
DNA (1317bp) protein (439aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL86777.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein AtheD1_05135 id=1775354 bin=GWE2_Bacteroidetes_42_24 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes rbh
hypothetical protein
scnpilot_p_inoc_scaffold_92_109
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

135333..135776
DNA (444bp) protein (148aa)
Thioesterase-like protein n=1 Tax=Pontibacter sp. BAB1700 RepID=J0V3E6_9BACT
Thioesterase-like protein {ECO:0000313|EMBL:EJF08547.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
thioesterase
scnpilot_p_inoc_scaffold_92_110
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

135807..136253
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KRL7_SOLCM
Uncharacterized protein {ECO:0000313|EMBL:KEO75407.1}; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source="Anditalea andensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_92_111
Aequorivita sublithincola, Aequorivita, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(136377..137312)
DNA (936bp) protein (312aa)
Uncharacterized protein {ECO:0000313|EMBL:AFL80513.1}; Flags: Precursor;; TaxID=746697 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aequorivita.;" source="Aeq
putative cell surface protein
scnpilot_p_inoc_scaffold_92_112
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(137439..138458)
DNA (1020bp) protein (340aa)
intradiol ring-cleavage dioxygenase id=7718379 bin=BACIGN_2 species=Flavobacterium sp. CF136 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
Por secretion system C-terminal sorting domain-containing protein {ECO:0000313|EMBL:EJL61963.1}; Flags: Precursor;; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Fl
protocatechuate dioxygenase
scnpilot_p_inoc_scaffold_92_113
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(138555..139244)
DNA (690bp) protein (230aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QEL1_SPILD
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AEI49107.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella
scnpilot_p_inoc_scaffold_92_114
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(139241..140281)
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00036D0206
Uncharacterized protein {ECO:0000313|EMBL:KGO91491.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sub
signal transduction histidine kinase
scnpilot_p_inoc_scaffold_92_115
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(140383..141408)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEJ2_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU57814.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source=
scnpilot_p_inoc_scaffold_92_116
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(141476..143878)
DNA (2403bp) protein (801aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEJ3_CHIPD rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU57815.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinen
scnpilot_p_inoc_scaffold_92_117
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

144105..146156
DNA (2052bp) protein (684aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00037548B2
PKD domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
hypothetical protein
scnpilot_p_inoc_scaffold_92_118
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(146359..147537)
DNA (1179bp) protein (393aa)
acyl-CoA dehydrogenase n=1 Tax=Segetibacter koreensis RepID=UPI0003656A3F
Contig90, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75626.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="
acyl-CoA dehydrogenase
scnpilot_p_inoc_scaffold_92_119
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

147906..148763
DNA (858bp) protein (286aa)
RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE96_NIAKG
RpoD subfamily RNA polymerase sigma-70 subunit
RNA polymerase, sigma 70 subunit, RpoD subfamily {ECO:0000313|EMBL:AEV97287.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" sour
scnpilot_p_inoc_scaffold_92_120
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(148934..149470)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C1V4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EIJ37597.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 195
hypothetical protein
Displaying items 91-120 of 194 in total

View Taxonomy