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scnpilot_p_inoc_scaffold_72_43

Organism: SCNpilot_P_inoc_Sphingobacteriales_44_17

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 ASCG 13 / 38
Location: comp(55340..55915)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Dyadobacter beijingensis RepID=UPI0003620A11 similarity UNIREF
DB: UNIREF100
  • Identity: 50.0
  • Coverage: 170.0
  • Bit_score: 174
  • Evalue 1.20e-40
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 49.4
  • Coverage: 170.0
  • Bit_score: 171
  • Evalue 2.90e-40
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACT94044.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacte similarity UNIPROT
DB: UniProtKB
  • Identity: 49.4
  • Coverage: 170.0
  • Bit_score: 171
  • Evalue 1.50e-39

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Taxonomy

Dyadobacter fermentans → Dyadobacter → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 576
ATGAACCCGACTTCACATTTGGACTGGAATACCGGGCAGGGCTTTGAGCGCCTGTTCAGGGAATTGTACAGTCCGCTATACCGGTATGCCTGTGGTATTTTATCAGATGAGATGCAGAGTGAGGAGGTGGTGCAGGATGTATTTCTGAAGCTGTGGCAGCAGCGGGAACAGCTTGCTGTCACGACCAATATGCAGGCTTACCTCTACAGGGCCGTGCATAACCAGGCGGTCAACATCTTAAATCGTGCCAAAGTGGAACAGAAATATCAGCAATTTGCGCGGCACCGTGCGCCGGATTATGAAATGTCGCCTGCGCACAGGCTGCAGGCAAGCGAGCTGCAGCAGCGTATCTTACGTGTGCTGGCTACCATACCGGAAAAATGCAGGACCATTTTTCACCTGAGCAGGCAGGAAGAGCTGAGCTACAGGGAAATAGCGGAAAAGCTGGGCCTGTCTGTAAAGACCGTGGAGAACCAGATGAGCAAGGCCCTTAAGATACTTCGGGCAGAGCTGAAAGATTATTTGCCTTTGCTGGCAGGATGGATCACATTTTTAGGTGTTTTCTTTAAAAATTAA
PROTEIN sequence
Length: 192
MNPTSHLDWNTGQGFERLFRELYSPLYRYACGILSDEMQSEEVVQDVFLKLWQQREQLAVTTNMQAYLYRAVHNQAVNILNRAKVEQKYQQFARHRAPDYEMSPAHRLQASELQQRILRVLATIPEKCRTIFHLSRQEELSYREIAEKLGLSVKTVENQMSKALKILRAELKDYLPLLAGWITFLGVFFKN*