ggKbase home page

scnpilot_p_inoc_scaffold_29_81

Organism: SCNpilot_P_inoc_Paludibacter_47_17

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(117991..120258)

Top 3 Functional Annotations

Value Algorithm Source
Candidate pectin or pectate lyase n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FKK5_FLAJ1 similarity UNIREF
DB: UNIREF100
  • Identity: 55.7
  • Coverage: 668.0
  • Bit_score: 747
  • Evalue 1.10e-212
  • rbh
Endo-1,4-beta-xylanase A {ECO:0000313|EMBL:GAO29526.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548 similarity UNIPROT
DB: UniProtKB
  • Identity: 57.6
  • Coverage: 762.0
  • Bit_score: 893
  • Evalue 1.70e-256
Pectate lyase/Amb allergen similarity KEGG
DB: KEGG
  • Identity: 55.7
  • Coverage: 668.0
  • Bit_score: 747
  • Evalue 3.00e-213

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Geofilum rubicundum → Geofilum → Bacteroidales → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 2268
ATGCAAAAAACACTACTACTCTTCTTGTTTGTGCTGAATGCAGTGGCCGGCGCCGGGGCGGTTCAACTCACCGAGGCCGGAGGCTGGCGCGAGACGGCCTACGTTCAATGGTTGCCGGTGGAGGGAGCCGATGCGTACCATGTATATGTTTCGGGCGAGGGGATGGTCAACAAACGGATCGATACACAGTTGATCCGGAGTTACGGAACGTATTTCAGAGCCGACGTTCCGGGGCTGGCTGCCGGTGGTTATGTGCTGAAGGTGGTTCCGGTGACAGGCGGACAGGAAGGGGAGGCTGCTTCGACGCAGAATATTACGGTTGCGGCTCACGACCGGACCGGGTTTGCTTTTGCCGACGGCCGTGTCCCCGGAGCCTATAAAGCCGACGGAACTCCCAAGCCGAACGCTGTGGTGTTGTACATTACCGAGAATACAAAAAATACGGTTTCGATAGAGGTAACCGGCGCCAATGCCAACCCCTGCGTGGGAATTCAAACGATACTCGATGGGTTTAAAAAAGGAAGGGATAATCGTCCGCTTATCGTGCGGTTTGTGGGTCGGATCACCGATCCGGCGTATTTGCTGAATGGCGATATAGTGGTTGAAAACAACAACAACGCTGCTTCTTATATTACCCTCGAAGGTATTGGCAACGATGCGGTGGCCGATGGTTGGGGGATTCGGGTGAAAAACGCCAGCAATGTCGAAGTCAGGAACTTAGGTACGATGAATTGCGATTCCGACGAGGGCGATAATATCAGTCTGCAGCAAAGCAACGAATACATCTGGGTACATCATTGCGATTTCTTTTACGGCAAACCGGGGGGTGACGCCGATCAGGCTAAGGGCGACGGTGCGCTCGACAGTAAGACGTCGGGCTTTGTAACGTTTGCCTACAATCATTTCTGGGATACCGGGAAATCGAACCTGTTGGGCAACGGAACCGAAGAGCCCCGTTACCTGAGTTACCACCACAACTGGTACGATCATTCCGATAGCCGCCATCCCCGGGTACGCAGTCATCACGTTCATGTGTTCAATAATTATTACGATGGGGTCGCCAAGTACGGAGTAGGTTCGACCAACGCATCCTCGGTGTTTGTAGAAGCTAATTATTTCCGCAATTGCGGCTATCCGATGCTTATTTCGATGCAAGGATCGGACGTATGGAGCAGTTCGAAAAATGCCAACGATTATACCACGATGCCTACTTTTTCGAAAGAGAACGGAGGAGTCATCAAATCGTACAATAATTACATGACCGGTCAAAAACGTTTTGTAGCCTGGGGAAATACCGCTTTCCCGAACTCAACGGTCGATTTTGATGCTTATGTGGTGAATAGTGCTGCCGAAACAGTGCCCGCAACCGTAACCGCTTACAAAGGAGGAAGCAGCTATTCCAATTTCGATACCGATCCTCAGTTGATGTATACCTATGTAGCCGATACGCCCGAAGCTGCCCGCGATAGGGTAATGCAATGGGCCGGACGAATGCAGGGAGGCGATTTTAAGTGGACATTCAACAATGCCGTCGACGACTCTTCGTCGGATATCAACCCCGGCCTGCGCGATGCTCTGGCTTCTTATCGCTCGCAGCTGGTGGCGGTGCAGGGCGATGGAAATGCACAGGGCGGTGGCGACGACGATGAGGATGATAACGGCGGCGGCAACGATGGGCCGGCTGTGGATCTGACACATAATTTCACAACCAATGGCAAAGAGAGCAGCTTCTTTACCATCAACGGAAGTTTATCCGATTCGAAAGGAAGCGTACAGTACGGCGGGCTTACACTTACGATCTGCCTGAAGATCGAATCGTCGACTTCTATTCAGTTCACTACGGCCAAAGCATCGGTGCTCACGTTGGTTTTCAATACCGGATTTACAGGAAAGATTAAAATCAACGGAACCGATTATCCGGCCGTTGCAGGAAAAGTGACCCTCAATCTGGCTGCCGGTACCCATACAATAACCAAAGCCGATGTTGCTAATCTCTATCTGATCGGTATTGCCTATGAAACGACAAGGTTGAACGAACCCGGGATCAAAGAACTGAAAATGTGGCTGGATGTAACCACCCGGCAACTGATTATCGGAAGTACGGATGAGGAGATCAGAAGCGTGGCGCTGTATTCGGCAGCAGGTAACCTTGTCAAGGCGGTGTCGGGAGCAGTTAGTTCGTTCGATGTGTCGGAATTACCCCGCGGAGTGTACATCGTGAAGGTAGTGACAAAAAACGGTGATTATTCGCAGAAACTGCTTAAATAA
PROTEIN sequence
Length: 756
MQKTLLLFLFVLNAVAGAGAVQLTEAGGWRETAYVQWLPVEGADAYHVYVSGEGMVNKRIDTQLIRSYGTYFRADVPGLAAGGYVLKVVPVTGGQEGEAASTQNITVAAHDRTGFAFADGRVPGAYKADGTPKPNAVVLYITENTKNTVSIEVTGANANPCVGIQTILDGFKKGRDNRPLIVRFVGRITDPAYLLNGDIVVENNNNAASYITLEGIGNDAVADGWGIRVKNASNVEVRNLGTMNCDSDEGDNISLQQSNEYIWVHHCDFFYGKPGGDADQAKGDGALDSKTSGFVTFAYNHFWDTGKSNLLGNGTEEPRYLSYHHNWYDHSDSRHPRVRSHHVHVFNNYYDGVAKYGVGSTNASSVFVEANYFRNCGYPMLISMQGSDVWSSSKNANDYTTMPTFSKENGGVIKSYNNYMTGQKRFVAWGNTAFPNSTVDFDAYVVNSAAETVPATVTAYKGGSSYSNFDTDPQLMYTYVADTPEAARDRVMQWAGRMQGGDFKWTFNNAVDDSSSDINPGLRDALASYRSQLVAVQGDGNAQGGGDDDEDDNGGGNDGPAVDLTHNFTTNGKESSFFTINGSLSDSKGSVQYGGLTLTICLKIESSTSIQFTTAKASVLTLVFNTGFTGKIKINGTDYPAVAGKVTLNLAAGTHTITKADVANLYLIGIAYETTRLNEPGIKELKMWLDVTTRQLIIGSTDEEIRSVALYSAAGNLVKAVSGAVSSFDVSELPRGVYIVKVVTKNGDYSQKLLK*