ggKbase home page

scnpilot_p_inoc_scaffold_546_4

Organism: SCNpilot_P_inoc_Paludibacter_47_17

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(1801..3303)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding s4 domain protein; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] Tax=CG_Paludi_01 similarity UNIPROT
DB: UniProtKB
  • Identity: 60.5
  • Coverage: 514.0
  • Bit_score: 561
  • Evalue 1.00e-156
Pseudouridine synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T154_PALPW similarity UNIREF
DB: UNIREF100
  • Identity: 59.3
  • Coverage: 521.0
  • Bit_score: 560
  • Evalue 1.60e-156
  • rbh
RNA-binding s4 domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 59.3
  • Coverage: 521.0
  • Bit_score: 560
  • Evalue 4.50e-157

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

CG_Paludi_01 → Paludibacter → Bacteroidales → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1503
TTGTGGTTTCGGGAAATATTCCGATATTTGCAGGCTCAAAAATTAATTTTATTTGTACAAATGACAAACAATGAAAACTGGCAGGAACGCCCCAGAAAAGAGGGTTCCGGGGCCGGCCGTGATGGTAAACCATTTGAAAAACGCGATGTGAGATCGATACTGAAAGGTACAAGAGGAGCCTCCCGGATTGGCTCAAATCAAACTCGTGATAATGATCGTCCGTCATTCAAGCCGGATTTTAGTAAGAGAGAAGAAAACAGACAGAACTTTGAAAATCGTGAGCCACGTCCCTACGATGCTTCCCGTCAGGATCGTCCGTACGAGCGCCGTGAACCGAAATCTTTTGATCGTCCCTATGAACGTCGTGAACCGCGCCCGTACGATGCCTCCCGTCAGGATCGCCCGTACGAACGTCGTGAGCCGCGCAGTTTCGAATCCCGCGAGAATCGTCCGTACGAATCCCGCGAAAACCGGCCTTACCAGCCCCGTGAAAACCGTCCTTACGAACGGCGTGAAGGCGGTTATTCCCAGGACAGGAATTCGACCGGCCGTCCGCGATTCAAACCTAATTTTCAGGAAGGACAGGGAGGCGACACCAACCGTCGTCCGCGTGTTACATTACGCAAGCCGGGCGAACATGCCGAAGGAAACTTTGTCGAAACTCGTTTTGATACCCGCGATACTACCGGACGCCGTCCGCGTATCCGTTCAGGTAATGTAGATCCCAATGCAAAATACAGCAAGAAAAAACAGCTCGAATACCGTCGTAATGAAGTTGATTTTACGAAACCGGTACGTCTGAATAAATTCCTCGCCAATGCAGGAATATGTTCCCGTCGCGAAGCCGATGAATTTATCCGTGCCGGGGTGATTACGGTCAATGGTGAAATCGTTACCGAAATGGGCGTGAAAGTGATGCACTCCGATAAGGTGATGTTCCACAATCAGTTGGTACGCTCGGAGCGTAAGGTGTATATTTTGCTGAATAAGCCGAAGGATACCGTCACCACGGCCGAAGATACACACGATCGCCGTACGGTGCTCGATCTGGTGAAAAATGCATGCAGCGAACGTATCTATCCGGTCGGTCGTCTCGACCGTAATACGACGGGTGTTTTGTTGCTTACCAACGATGGCGATCTGGCGTCGAAGCTCACACATCCGAAGTATGACAAAAAGAAAATTTATCACGTAACGCTCGATAAACCACTCGAAATTCCCGATTTTGAAGCTATTCTGTCGGGTATCAGTCTGGATGAGGAAAAAATTGCGGCCGATGAACTGAATTTTGTGAAGGACGACGATTTCCGCCAGGTCGGTATCCAGATTCACTCGGGACAAAACCGTGTAGTGCGTCGTATTTTCGAGAAACTGGGTTATAAGGTAGTGCGTCTCGACCGCGTATTCTTTGCGGGACTGACTAAGAAGAATCTGCCCCGCGGTAAGTATCGTTTCCTCACCGAAAGGGAGGTGAATATGCTGAAAATGGGAGCCTACGAATAA
PROTEIN sequence
Length: 501
LWFREIFRYLQAQKLILFVQMTNNENWQERPRKEGSGAGRDGKPFEKRDVRSILKGTRGASRIGSNQTRDNDRPSFKPDFSKREENRQNFENREPRPYDASRQDRPYERREPKSFDRPYERREPRPYDASRQDRPYERREPRSFESRENRPYESRENRPYQPRENRPYERREGGYSQDRNSTGRPRFKPNFQEGQGGDTNRRPRVTLRKPGEHAEGNFVETRFDTRDTTGRRPRIRSGNVDPNAKYSKKKQLEYRRNEVDFTKPVRLNKFLANAGICSRREADEFIRAGVITVNGEIVTEMGVKVMHSDKVMFHNQLVRSERKVYILLNKPKDTVTTAEDTHDRRTVLDLVKNACSERIYPVGRLDRNTTGVLLLTNDGDLASKLTHPKYDKKKIYHVTLDKPLEIPDFEAILSGISLDEEKIAADELNFVKDDDFRQVGIQIHSGQNRVVRRIFEKLGYKVVRLDRVFFAGLTKKNLPRGKYRFLTEREVNMLKMGAYE*