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scnpilot_p_inoc_scaffold_546

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_546_1
unknown

Not on your lists

comp(47..157)
DNA (111bp) protein (37aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_546_2
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(335..1000)
DNA (666bp) protein (222aa)
lipoate-protein ligase b (EC:2.3.1.181)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000
Octanoyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0G4_PALPW rbh
scnpilot_p_inoc_scaffold_546_3
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1020..1733)
DNA (714bp) protein (238aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0G3_PALPW rbh
monofunctional biosynthetic peptidoglycan transglycosylase
scnpilot_p_inoc_scaffold_546_4
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1801..3303)
DNA (1503bp) protein (501aa)
RNA-binding s4 domain protein; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] Tax=CG_Paludi_01
Pseudouridine synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T154_PALPW rbh
RNA-binding s4 domain-containing protein
scnpilot_p_inoc_scaffold_546_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3367..4635
DNA (1269bp) protein (423aa)
Recombination protein MgsA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T117_PALPW rbh
recombination protein mgsa
Recombination protein MgsA {ECO:0000313|EMBL:ADQ78398.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionici
scnpilot_p_inoc_scaffold_546_6
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(4632..6311)
DNA (1680bp) protein (560aa)
Phage shock protein C, PspC n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T065_PALPW rbh
phage shock protein c, pspc
Phage shock protein C, PspC {ECO:0000313|EMBL:ADQ78255.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionic
scnpilot_p_inoc_scaffold_546_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6308..6649)
DNA (342bp) protein (114aa)
Transcriptional regulator, PadR family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T064_PALPW
transcriptional regulator, padr family; K10947 PadR family transcriptional regulator, regulatory protein PadR Tax=CG_Paludi_01
transcriptional regulator, padr family
scnpilot_p_inoc_scaffold_546_8
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6646..7959)
DNA (1314bp) protein (438aa)
Outer membrane efflux protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T063_PALPW rbh
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ADQ78253.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="P
scnpilot_p_inoc_scaffold_546_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7959..9071)
DNA (1113bp) protein (371aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T062_PALPW rbh
efflux transporter, rnd family, mfp subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADQ78252.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludi
scnpilot_p_inoc_scaffold_546_10
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9096..10343)
DNA (1248bp) protein (416aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T060_PALPW rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ78250.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludib
scnpilot_p_inoc_scaffold_546_11
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10356..11612)
DNA (1257bp) protein (419aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T059_PALPW rbh
hypothetical protein; K02004 putative ABC transport system permease protein Tax=CG_Paludi_01
hypothetical protein
scnpilot_p_inoc_scaffold_546_12
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11622..12296)
DNA (675bp) protein (225aa)
ABC transporter related protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T057_PALPW rbh
ABC transporter; K02003 putative ABC transport system ATP-binding protein Tax=CG_Paludi_01
ABC transporter
scnpilot_p_inoc_scaffold_546_13
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12507..13235)
DNA (729bp) protein (243aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroi
Phospholipid/glycerol acyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0V4_PALPW rbh
phospholipid/glycerol acyltransferase
scnpilot_p_inoc_scaffold_546_14
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13297..14220)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0V3_PALPW rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ78228.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludib
scnpilot_p_inoc_scaffold_546_15
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14228..15211)
DNA (984bp) protein (328aa)
PfkB domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0V2_PALPW rbh
pfkb domain protein Tax=CG_Paludi_01
pfkb domain-containing protein
scnpilot_p_inoc_scaffold_546_16
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15419..17341)
DNA (1923bp) protein (641aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aqu
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Mesoflavibacter zeaxanthinifaciens RepID=UPI000255ADB2 rbh
scnpilot_p_inoc_scaffold_546_17
unknown

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comp(17477..17884)
DNA (408bp) protein (136aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_546_18
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17932..18744)
DNA (813bp) protein (271aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1L0_PALPW rbh
short-chain dehydrogenase/reductase sdr
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADQ78604.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibact
scnpilot_p_inoc_scaffold_546_19
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18768..19931)
DNA (1164bp) protein (388aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:00002
mannonate dehydratase (EC:4.2.1.8)
Mannonate dehydratase n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HM68_BACVU rbh
scnpilot_p_inoc_scaffold_546_20
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(20012..22090)
DNA (2079bp) protein (693aa)
alpha-glucuronidase (EC:3.2.1.139); K01235 alpha-glucuronidase [EC:3.2.1.139] Tax=GWC2_Bacteroidetes_46_850_curated
alpha-glucuronidase (EC:3.2.1.139)
Alpha-glucuronidase id=4913128 bin=GWC2_Bacteroidetes_46_850 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes rbh
scnpilot_p_inoc_scaffold_546_21
Saccharicrinis fermentans, Saccharicrinis, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22186..24801)
DNA (2616bp) protein (872aa)
beta-glucosidase n=1 Tax=Thermophagus xiamenensis RepID=UPI000255DC0D rbh
Periplasmic beta-glucosidase {ECO:0000313|EMBL:GAF03168.1}; TaxID=869213 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Saccharicrinis.;" source="Saccharicrinis ferme
glucan 1,4-alpha-glucosidase
scnpilot_p_inoc_scaffold_546_22
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(24865..26793)
DNA (1929bp) protein (643aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI0003750314 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHM62666.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirga
hypothetical protein
scnpilot_p_inoc_scaffold_546_23
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26806..27774)
DNA (969bp) protein (323aa)
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:KJF45171.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium
alpha-N-arabinofuranosidase
Beta-xylosidase id=4913129 bin=GWC2_Bacteroidetes_46_850 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Bacteroidetes_46_850 organism_group=Bacteroidetes rbh
scnpilot_p_inoc_scaffold_546_24
Anditalea andensis, Anditalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27789..28913)
DNA (1125bp) protein (375aa)
Beta-xylanase {ECO:0000256|RuleBase:RU361174}; EC=3.2.1.8 {ECO:0000256|RuleBase:RU361174};; TaxID=1048983 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Anditalea.;" source
endo-1,4-beta-xylanase n=1 Tax=Anaerophaga thermohalophila RepID=UPI0003168897 rbh
beta-1,4-xylanase
scnpilot_p_inoc_scaffold_546_25
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28936..30417)
DNA (1482bp) protein (494aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=1 Tax=Bacteroides xylanisolvens CL03T12C04 RepID=I9UNU7_9BACE rbh
sugar (Glycoside-Pentoside-Hexuronide) transporter
Sugar (Glycoside-Pentoside-Hexuronide) transporter {ECO:0000313|EMBL:EIY84356.1}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bact
scnpilot_p_inoc_scaffold_546_26
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30434..32932)
DNA (2499bp) protein (833aa)
Putative uncharacterized protein id=2021991 bin=GWD2_Bacteroidales_45_23 species=Dysgonomonas mossii genus=Dysgonomonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes rbh
hypothetical protein Tax=GWC2_Bacteroidetes_46_850_curated
hypothetical protein
scnpilot_p_inoc_scaffold_546_27
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33346..37440)
DNA (4095bp) protein (1365aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IWT9_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:EGK02286.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BA
Signal transduction histidine kinase
scnpilot_p_inoc_scaffold_546_28
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37461..38228)
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3A3_PALPW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADQ79197.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludib
scnpilot_p_inoc_scaffold_546_29
Bacteroides clarus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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38467..41886
DNA (3420bp) protein (1140aa)
Conserved domain protein n=1 Tax=Bacteroides clarus YIT 12056 RepID=F3PFW1_9BACE
Conserved domain protein {ECO:0000313|EMBL:EGF53366.1}; TaxID=762984 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides clarus YIT 12056.;
scnpilot_p_inoc_scaffold_546_30
Alistipes indistinctus, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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41909..43297
DNA (1389bp) protein (463aa)
Putative uncharacterized protein n=1 Tax=Alistipes indistinctus YIT 12060 RepID=G5H9W9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EHB91385.1}; TaxID=742725 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes indistinctus YIT 12060.;
hypothetical protein
Displaying items 1-30 of 48 in total

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