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scnpilot_p_inoc_scaffold_1814

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1814_1
Edwardsiella ictaluri, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..147
DNA (147bp) protein (49aa)
Elongation factor Tu n=1 Tax=Tolumonas auensis (strain DSM 9187 / TA4) RepID=C4LBV9_TOLAT
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=634503 species="Bacteria; Proteobacteria; Gammaproteobacter
scnpilot_p_inoc_scaffold_1814_2
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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372..803
DNA (432bp) protein (144aa)
Protein translocase subunit SecE n=2 Tax=Rhodanobacter RepID=I4WGB0_9GAMM
preprotein translocase, SecE subunit Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
preprotein translocase subunit SecE
scnpilot_p_inoc_scaffold_1814_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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807..1379
DNA (573bp) protein (191aa)
Transcription termination/antitermination protein NusG n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8S9_9GAMM rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomon
transcription termination/antitermination factor NusG
scnpilot_p_inoc_scaffold_1814_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1544..1975
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=2 Tax=Rhodanobacter RepID=I4WGB2_9GAMM
LSU ribosomal protein L11P
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhod
scnpilot_p_inoc_scaffold_1814_5

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1977..2684
DNA (708bp) protein (236aa)
50s ribosomal protein l1 n=1 Tax=mine drainage metagenome RepID=T0ZAT5_9ZZZZ rbh
50s ribosomal protein l1 {ECO:0000313|EMBL:EQD42178.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein L1
scnpilot_p_inoc_scaffold_1814_6

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3095..3619
DNA (525bp) protein (175aa)
50s ribosomal protein l10 n=1 Tax=mine drainage metagenome RepID=T0ZN36_9ZZZZ
50s ribosomal protein l10 {ECO:0000313|EMBL:EQD45892.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L10
scnpilot_p_inoc_scaffold_1814_7
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3742..4119
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVH8_PSEUU
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacte
50S ribosomal protein L7/L12
scnpilot_p_inoc_scaffold_1814_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4500..8654
DNA (4155bp) protein (1385aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Dyella ginsengisoli RepID=UPI0003462B2D rbh
scnpilot_p_inoc_scaffold_1814_9
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8800..13017
DNA (4218bp) protein (1406aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Dyella ginsengisoli RepID=UPI0003455CD3
scnpilot_p_inoc_scaffold_1814_10

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13228..13602
DNA (375bp) protein (125aa)
Ribosomal protein S12, bacterial-type n=1 Tax=mine drainage metagenome RepID=T1AXQ2_9ZZZZ
Ribosomal protein S12, bacterial-type {ECO:0000313|EMBL:EQD65416.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S12
scnpilot_p_inoc_scaffold_1814_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13613..14080
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=1 Tax=Dyella ginsengisoli RepID=UPI000344DE54
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobac
30S ribosomal protein S7
scnpilot_p_inoc_scaffold_1814_12
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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14165..16255
DNA (2091bp) protein (697aa)
Translation elongation factor 2 (EF-2/EF-G) n=5 Tax=mine drainage metagenome RepID=T1CGF9_9ZZZZ
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000313|EMBL:KIJ72065.1}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchae
fusA; elongation factor G
Displaying 12 items

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