ggKbase home page
Advanced Search
Search Help

scnpilot_p_inoc_scaffold_451_3

Organism: SCNpilot_P_inoc_Flavobacterium_40_86

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 15 / 38 MC: 1
Location: comp(5182..9480)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 95.2
  • Coverage: 999.99
  • Bit_score: 2703
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S9Z7_9FLAO similarity UNIREF
DB: UNIREF100
  • Identity: 95.2
  • Coverage: 999.99
  • Bit_score: 2703
  • Evalue 0.0
  • rbh
rpoC; DNA-directed RNA polymerase beta' subunit RpoC similarity KEGG
DB: KEGG
  • Identity: 92.2
  • Coverage: 999.99
  • Bit_score: 2632
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavobacterium enshiense → Flavobacterium → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 4299
ATGACGAGATTAAAAGATAAAAATACCGTTAAAAGATTTAACAAAATTTCGATAGGACTTGCTTCCCCGGAATCCATTCTGGCAGAATCAAGAGGTGAGGTTTTAAAACCGGAAACCATCAACTATCGTACACACAAACCAGAGCGTGACGGTCTTTTCTGCGAAAGAATTTTCGGTCCAGTAAAAGATTTCGAATGTGCTTGTGGTAAATACAAAAGAATCCGTTATAAAGGAATCGTTTGTGACCGTTGTGGAGTTGAAGTTACGGAGAAAAAAGTACGTAGAGACAGAGTTGGACACATCAATTTGGTGGTGCCTATCGCTCATATCTGGTATTTCCGTTCCCTTCCAAACAAAATTGGTTACATTCTAGGCTTGCCGTCTAAGAAATTAGACATGATTATTTACTACGAAAGATATGTAGTAATTCAACCGGGTATTGCTAAAAATCCAGAAGGAGAAACTTTAAACCGATTAGACTTCTTAACTGAAGAAGAGTATTTGAATATTTTAGATACCCTTCCGATGGAGAATCAATATTTAGATGATACAGATCCGAATAAATTCATCGCTAAGATGGGTGCGGAATGTATTATGGATTTATTGGCACGTACAGATTTAGATGCTTTGTCTTACGACCTGCGTCACGCTGCTAATAATGAAACATCAAAACAACGTAAAACAGAAGCTTTAAAAAGACTTCAGGTTGTAGAATCGTTCCGTGAAGCAAACAATAACAGAGAAAACCGTCCGGAATGGATGATTTTAAAAGTAATCCCGGTTATTCCGCCGGAATTACGTCCGTTAGTGCCGCTTGATGGAGGTCGTTTCGCAACATCGGATTTAAATGATTTGTACCGAAGAGTAATCATCCGTAACAACCGTTTAAAACGATTAATGGAAATTAAAGCTCCGGAAGTAATCTTAAGAAACGAAAAACGTATGTTACAGGAATCTGTAGACTCGTTATTCGATAACACAAGAAAAGCTTCTGCTGTTAAAACAGAATCAAACAGACCATTAAAATCCCTTTCGGATTCCTTAAAAGGTAAGCAAGGTCGTTTCCGTCAGAACTTATTAGGTAAACGTGTGGATTATTCTGCCCGTTCGGTAATTGTTGTTGGACCGGAAATGAAATTGTTCGAATGTGGTCTGCCTAAAGATATGGCTGCGGAACTGTACAAACCATTCGTTATTCGTAAATTAATCGAAAGAGGAATTGTTAAAACAGTGAAGTCGGCTAAGAAAATTATCGACAAAAAAGAGCCGGTAGTTTGGGATATCCTTGAAAACGTAATTAAAGGACACCCGGTACTGCTAAACCGTGCTCCTACTTTGCACAGATTAGGTATCCAGGCATTCCAGCCAAAATTGATTGAAGGTAAAGCGATCCAGTTACACCCGTTAGTGTGTACGGCGTTTAATGCCGATTTCGATGGTGACCAGATGGCGGTTCACTTACCATTAGGACCGGAAGCTATTTTGGAAGCACAATTATTAATGTTGGCTTCACACAATATCTTGAACCCTGCAAATGGTGCGCCAATCACGGTACCTTCTCAGGACATGGTTTTGGGTCTGTATTACATGACCAAAGAACGTTTGTCTACTCCGGATCATAAAATTTTAGGTGAAGGCCTGACTTTTTACTCGGCAGAAGAAGTAAATATTGCTTTGAATGAAGGGAAATTAGAGTTGAATGCCCGTGTTAAAATCAGAGCAAAAGACTTTAATGAAAACGGAGAATTAGTATATAAAATTATCCAGACTACTGCAGGTAGAGTATTATTTAACGAAGTAGTACCGGAAGCAGCTGGTTATATAAATGAAGTATTAACGAAGAAGTCCTTAAGAGATATTATTGGTAAAATTTTAAGTGTTACCAATGTACCTACTACTGCTGCCTTCTTGGATAATATGAAAGATATGGGATACCGTTTCGCTTTCAGAGGAGGACTTTCTTTCTCTTTAGGGGATATCAAAATTCCAGATCAGAAACAAGACCTTATTGCGGATGCAAACGGTCAGGTTGAAGCGATTTCGATGAACTATAACATGGGTCTTATTACTAATAATGAGCGTTACAACCAGGTTATTGACGTTTGGACTTCAACCAATGCATTGCTTACAGAATTAGCGATGAAAAACATTAGAGAAGACCAGCAAGGATTCAACTCGGTGTATATGATGCTTGACTCTGGAGCGAGGGGATCTAAAGAACAGATTCGTCAGTTAACCGGTATGCGTGGTTTGATGGCTAAGCCTAAAAAATCAACCGCTGGTGGTGGTGAAATTATTGAAAACCCGATTTTATCGAACTTTAAAGAAGGACTTTCAATTTTAGAATACTTTATTTCTACTCACGGTGCTCGTAAAGGTCTTGCGGATACGGCTCTTAAAACGGCAGATGCCGGGTACTTAACCAGAAGATTACATGACGTTTCTCAGGATGTTATTGTAAACTCTGTAGATTGTGGTACTTTAAGAGGTGTTGAAGTATCAGCATTGAAAAAGAATGAGGAAGTTGTTGAAACTTTAGGAGAAAGAATCTTAGGACGTGTTGCGTTACAAGATGTAATCAATCCTTTAACCAGCGAAATTTTAGTTCACGCAGGTGATGAAATTACAGAAGCTATCGTTAAAGCTATTGACGCTTCTCCAATTGAAAGAGTAGACGTTCGTTCTCCGTTAACTTGTGAAGCTGGAAAAGGTATCTGTGCAAAATGTTACGGACGTAACCTGGCAACAGGTAAAATGACCCAGAGAGGTGAAGCAGTAGGAGTTATTGCAGCACAGTCTATTGGTGAGCCGGGTACACAGTTAACACTACGTACATTCCACGTTGGGGGTACAGCAGGTAACATTTCTGAAGAATCAAGTATCATTACGAAATTCAAAGGAAGACTTGAAATCGAAGATTTAAAAACTGTTAAAGGAGAAGACAATGAAGGTAATGCTATCGATATTGTAATTTCCCGTTCAACAGAATTAAAATTAGTAGACGAAACAACAGGAATTGTATTAAATACACATAATATCCCTTACGGATCAAGCATCTTTGTTAAAGATGGTGAAGTAGTAGATAAAGGAACTACAATCTGTAAATGGGACCCGTATAATGGTGTAATTATTTCAGAATTTACAGGTAAGGTGGCTTACGAAGATATCGAACAGGGACAATCGTTCATGGTTGAAATCGATGAGCAAACCGGATTCCAGGAAAAAGTAATCTCTGAAGCCAGAAATAAAAAATTAATTCCTACTTTATTAATCTACGGAAAAGACGGAGAATTAATCCGTTCTTACAACTTACCGGTGGGTGCCCACCTTATGGTTGATGACGGAGAGAAAATTAAAGCAGGTAAGATTTTAGTAAAAATCCCTCGTCGTTCTTCAAAAGCAGGGGATATTACAGGAGGTTTACCAAGAATTACCGAGTTGTTAGAAGCTCGTAATCCTTCAAACCCGGCTGTAGTATCTGAGATTGACGGTGTAGTATCTTTTGGAAAAATCAAAAGAGGTAACCGTGAGATCGTTGTAGAATCTAAATTTGGTGAGATTAAGAAATACTTAGTTAAACTTTCAAACCAGATCTTAGTTCAGGAAAATGACTACGTAAGAGCAGGTATGCCACTATCTGACGGAGCAATTACTCCGGATGATATCTTAAGAATCCAGGGACCATCTGCTGTACAACAGTACTTGGTAAATGAAATTCAGGAAGTGTACCGTTTACAAGGGGTAAAAATTAATGACAAGCACTTTGAAGTTGTAATTCGTCAGATGATGCGTAAAGTTCAAATCCAGGATCCGGGTGATACACTATTCTTAGAAGATCAGTTGGCTCATACAAGTGACTTTATCGTTGAAAATGATAAATTATACGGAATGAAAGTTGTGGAAGATGCGGGTGATTCTGATAACCTGAAAGCAGGTCAGATCATATCGCCAAGAGAATTAAGAGATGAAAACTCTTTACTGAAGAGAAATGACAGAAACCTTGTAGTTGCAAGAGATGTGGTTCCGGCAACGGCTACTCCGATTCTTCAGGGTATTACAAGAGCGTCATTACAAACGAAATCGTTTATCTCGGCAGCATCGTTCCAGGAAACAACGAAAGTATTGAATGAAGCAGCTGTAGCTGGTAAAGTTGACGGATTAGAAGGATTGAAAGAAAATGTTATTGTGGGTCACAGAATCCCTGCTGGTACAGGTATGAGAGATTACGATAATATTATTGTAGGTTCTAAAGAAGAATTCAACGAATTAATGGCTGCAAAAGAAGAATTTAATTACTAA
PROTEIN sequence
Length: 1433
MTRLKDKNTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGPVKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKIGYILGLPSKKLDMIIYYERYVVIQPGIAKNPEGETLNRLDFLTEEEYLNILDTLPMENQYLDDTDPNKFIAKMGAECIMDLLARTDLDALSYDLRHAANNETSKQRKTEALKRLQVVESFREANNNRENRPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPEMKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTPDHKILGEGLTFYSAEEVNIALNEGKLELNARVKIRAKDFNENGELVYKIIQTTAGRVLFNEVVPEAAGYINEVLTKKSLRDIIGKILSVTNVPTTAAFLDNMKDMGYRFAFRGGLSFSLGDIKIPDQKQDLIADANGQVEAISMNYNMGLITNNERYNQVIDVWTSTNALLTELAMKNIREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNSVDCGTLRGVEVSALKKNEEVVETLGERILGRVALQDVINPLTSEILVHAGDEITEAIVKAIDASPIERVDVRSPLTCEAGKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTAGNISEESSIITKFKGRLEIEDLKTVKGEDNEGNAIDIVISRSTELKLVDETTGIVLNTHNIPYGSSIFVKDGEVVDKGTTICKWDPYNGVIISEFTGKVAYEDIEQGQSFMVEIDEQTGFQEKVISEARNKKLIPTLLIYGKDGELIRSYNLPVGAHLMVDDGEKIKAGKILVKIPRRSSKAGDITGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIVVESKFGEIKKYLVKLSNQILVQENDYVRAGMPLSDGAITPDDILRIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVIRQMMRKVQIQDPGDTLFLEDQLAHTSDFIVENDKLYGMKVVEDAGDSDNLKAGQIISPRELRDENSLLKRNDRNLVVARDVVPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAVAGKVDGLEGLKENVIVGHRIPAGTGMRDYDNIIVGSKEEFNELMAAKEEFNY*