ggKbase home page

scnpilot_p_inoc_scaffold_1304

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1304_1
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144..1268)
DNA (1125bp) protein (375aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBA8_NOVAD rbh
scnpilot_p_inoc_scaffold_1304_2
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1334..1789)
DNA (456bp) protein (152aa)
GCN5-related N-acetyltransferase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EB46_9SPHN
acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EHJ61513.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="No
scnpilot_p_inoc_scaffold_1304_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1786..2676)
DNA (891bp) protein (297aa)
RDD protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB64_NOVAD
hypothetical protein
RDD protein {ECO:0000313|EMBL:ABD24909.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromatic
scnpilot_p_inoc_scaffold_1304_4
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2673..3719)
DNA (1047bp) protein (349aa)
membrane protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B53E3A
Scaffold4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32854.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
hypothetical protein
scnpilot_p_inoc_scaffold_1304_5
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3716..5017)
DNA (1302bp) protein (434aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IH92_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA91343.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_p_inoc_scaffold_1304_6
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5064..6017)
DNA (954bp) protein (318aa)
ATPase AAA_3 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IH91_9SPHN
ATPase
ATPase AAA_3 {ECO:0000313|EMBL:CCA91342.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1
scnpilot_p_inoc_scaffold_1304_7
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6014..7228)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WFX7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EIZ79108.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_p_inoc_scaffold_1304_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7225..7848)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLF7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49232.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_1304_9
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7922..8818)
DNA (897bp) protein (299aa)
Prephenate dehydratase {ECO:0000313|EMBL:EJU09623.1}; EC=4.2.1.51 {ECO:0000313|EMBL:EJU09623.1};; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadace
Prephenate dehydratase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VNL0_9SPHN rbh
prephenate dehydratase
scnpilot_p_inoc_scaffold_1304_10
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9038..9643
DNA (606bp) protein (202aa)
Cytochrome C n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I1S1_9SPHN
Cytochrome C {ECO:0000313|EMBL:EQB18273.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindan
cytochrome C
scnpilot_p_inoc_scaffold_1304_11
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10177..10338
DNA (162bp) protein (54aa)
Uncharacterized protein {ECO:0000313|EMBL:EIZ79734.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_p_inoc_scaffold_1304_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11244..12242)
DNA (999bp) protein (333aa)
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:GAO54931.1}; EC=4.2.1.46 {ECO:0000313|EMBL:GAO54931.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingom
NAD-dependent epimerase/dehydratase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3I7_NOVAD rbh
NAD-dependent epimerase/dehydratase
scnpilot_p_inoc_scaffold_1304_13
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12416..13363
DNA (948bp) protein (316aa)
L-threonine aldolase (EC:4.1.2.5)
Amino acid lyase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0GW22_9SPHN
Amino acid lyase {ECO:0000313|EMBL:EQB08181.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium li
scnpilot_p_inoc_scaffold_1304_14
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13635..14426)
DNA (792bp) protein (264aa)
Epimerase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H7V2_9SPHN
Epimerase {ECO:0000313|EMBL:EQB08183.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindanicl
NAD-dependent epimerase/dehydratase
scnpilot_p_inoc_scaffold_1304_15
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14489..17104
DNA (2616bp) protein (872aa)
aminopeptidase (EC:3.4.11.2)
Aminopeptidase N n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C5N0_9SPHN rbh
Aminopeptidase N {ECO:0000313|EMBL:EIZ79142.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp.
scnpilot_p_inoc_scaffold_1304_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17097..17852
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000370FE6F rbh
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
polyphenol oxidase
scnpilot_p_inoc_scaffold_1304_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18071..18634
DNA (564bp) protein (188aa)
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria;
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAJ8_NOVAD
scnpilot_p_inoc_scaffold_1304_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18645..19931
DNA (1287bp) protein (429aa)
Cytochrome b n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAJ9_NOVAD
cytochrome b/b6-like
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aroma
scnpilot_p_inoc_scaffold_1304_19
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19955..20791
DNA (837bp) protein (279aa)
Cytochrome C n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H7V8_9SPHN rbh
Cytochrome C {ECO:0000313|EMBL:EQB08188.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindan
cytochrome c1
scnpilot_p_inoc_scaffold_1304_20
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20903..21439
DNA (537bp) protein (179aa)
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000
Adenine phosphoribosyltransferase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFN5_9SPHN
scnpilot_p_inoc_scaffold_1304_21
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21769..23052
DNA (1284bp) protein (428aa)
integrase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4AB11 rbh
Integrase {ECO:0000313|EMBL:EQB16282.1}; Flags: Fragment;; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
putative integrase
Displaying 21 items

View Taxonomy