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scnpilot_p_inoc_scaffold_1125

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1125_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..491)
DNA (489bp) protein (163aa)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27); K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] Tax=GWE1_Thiobacillus_62_9_curated
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
glucose-1-phosphate adenylyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DACBE
scnpilot_p_inoc_scaffold_1125_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(547..1536)
DNA (990bp) protein (330aa)
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
glucokinase (EC:2.7.1.2)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B9A57
scnpilot_p_inoc_scaffold_1125_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1523..3220)
DNA (1698bp) protein (566aa)
glucose-6-phosphate isomerase (EC:5.3.1.9); K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] Tax=GWE1_Thiobacillus_62_9_curated
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase 2 id=1332711 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
scnpilot_p_inoc_scaffold_1125_4
unknown

Not on your lists

3510..3719
DNA (210bp) protein (70aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1125_5
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3919..4359)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003657832
Response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ACM03756.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodob
scnpilot_p_inoc_scaffold_1125_6
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4463..14680
DNA (10218bp) protein (3406aa)
T1SS-143 repeat domain protein (Fragment) n=1 Tax=Acinetobacter baumannii Naval-82 RepID=K6N0T9_ACIBA rbh
T1SS-143 repeat domain protein {ECO:0000313|EMBL:EKP57273.1}; Flags: Fragment;; TaxID=903921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acin
hemagglutinin/hemolysin-like protein
scnpilot_p_inoc_scaffold_1125_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14812..16212
DNA (1401bp) protein (467aa)
Putative type I secretion outer membrane protein, TolC family n=1 Tax=Variovorax paradoxus B4 RepID=T1XGX9_VARPD rbh
putative type I secretion outer membrane protein, TolC family
Putative type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:AGU51776.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vario
scnpilot_p_inoc_scaffold_1125_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16209..18467
DNA (2259bp) protein (753aa)
Type I secretion system ATPase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL55_VARPS rbh
type I secretion system ATPase rbh
Type I secretion system ATPase {ECO:0000313|EMBL:ACS21206.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax para
scnpilot_p_inoc_scaffold_1125_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18464..19696
DNA (1233bp) protein (411aa)
Type I secretion membrane fusion protein, HlyD family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL54_VARPS rbh
HlyD family type I secretion membrane fusion protein
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ACS21205.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
scnpilot_p_inoc_scaffold_1125_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19719..20165
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL53_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS21204.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Var
scnpilot_p_inoc_scaffold_1125_11
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20511..21422
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GH79_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB03091.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_1125_12
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21516..21824
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GQX3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB03092.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
scnpilot_p_inoc_scaffold_1125_13
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21840..22061)
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D43EE
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1125_14
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22058..22273)
DNA (216bp) protein (72aa)
conjugal transfer protein TraI n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036C9A12
Conjugal transfer protein TrbI {ECO:0000313|EMBL:EZP81834.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
conjugation TrbI family protein
scnpilot_p_inoc_scaffold_1125_15
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22405..23775
DNA (1371bp) protein (457aa)
Transposase of ISsp1 n=6 Tax=Sphingobium RepID=D4YYV3_SPHJU rbh
tnp; transposase of ISsp1
Transposase of ISsp1 {ECO:0000313|EMBL:BAI95535.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonic
scnpilot_p_inoc_scaffold_1125_16
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23831..24955)
DNA (1125bp) protein (375aa)
Conjugation TrbI-like protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCZ8_9SPHN
Conjugation TrbI-like protein {ECO:0000313|EMBL:EAT08742.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
conjugation TrbI family protein
scnpilot_p_inoc_scaffold_1125_17
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24955..25965)
DNA (1011bp) protein (337aa)
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCZ9_9SPHN rbh
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:EAT08741.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sourc
P-type conjugative transfer protein TrbG
scnpilot_p_inoc_scaffold_1125_18
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25962..26645)
DNA (684bp) protein (228aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILW3_9SPHN
conjugal transfer protein TrbF
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EQB03096.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
scnpilot_p_inoc_scaffold_1125_19
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26652..27965)
DNA (1314bp) protein (438aa)
P-type conjugative transfer protein TrbL n=2 Tax=Sphingomonas wittichii RepID=A5VCM7_SPHWW rbh
conjugal transfer protein TrbL
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
scnpilot_p_inoc_scaffold_1125_20
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27962..28369)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSJ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02933.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
scnpilot_p_inoc_scaffold_1125_21
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28383..29102)
DNA (720bp) protein (240aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingobium baderi LL03 RepID=T0HZJ4_9SPHN rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EQB02934.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
conjugal transfer protein TrbJ
scnpilot_p_inoc_scaffold_1125_22
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29099..31588)
DNA (2490bp) protein (830aa)
Conjugal transfer protein TrbE n=1 Tax=Sphingobium baderi LL03 RepID=T0HUG1_9SPHN rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:EQB02935.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
conjugal transfer ATPase TrbE
scnpilot_p_inoc_scaffold_1125_23
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31585..31866)
DNA (282bp) protein (94aa)
Conjugal transfer protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GGS8_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:EQB02936.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium b
type IV secretory pathway, VirB3 family protein
scnpilot_p_inoc_scaffold_1125_24
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31863..32231)
DNA (369bp) protein (123aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingobium baderi LL03 RepID=T0GQI8_9SPHN
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EQB02937.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
conjugal transfer protein TrbC
scnpilot_p_inoc_scaffold_1125_25
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32228..33166)
DNA (939bp) protein (313aa)
Conjugal transfer protein TrbB n=1 Tax=Sphingobium baderi LL03 RepID=T0GSK2_9SPHN
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EQB02938.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
P-type conjugative transfer ATPase TrbB
scnpilot_p_inoc_scaffold_1125_26
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33444..33872)
DNA (429bp) protein (143aa)
CopG family transcripitonal regulator n=1 Tax=Sphingobium baderi LL03 RepID=T0GGT3_9SPHN
CopG family transcripitonal regulator {ECO:0000313|EMBL:EQB02941.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="S
helix-turn-helix domain-containing protein
scnpilot_p_inoc_scaffold_1125_27
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33882..35864)
DNA (1983bp) protein (661aa)
Conjugal transfer protein TraG n=1 Tax=Sphingobium baderi LL03 RepID=T0GQJ1_9SPHN rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:EQB02942.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
conjugal transfer coupling protein TraG
scnpilot_p_inoc_scaffold_1125_28
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35880..37643)
DNA (1764bp) protein (588aa)
Type VI secretion protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GSK6_9SPHN rbh
Type VI secretion protein {ECO:0000313|EMBL:EQB02943.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium b
hypothetical protein
scnpilot_p_inoc_scaffold_1125_29
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37897..38463)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HZK1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB02944.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
hypothetical protein
scnpilot_p_inoc_scaffold_1125_30
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38460..39155)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HUG8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB02945.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium bad
lytic transglycosylase subunit
Displaying items 1-30 of 35 in total

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