ggKbase home page

scnpilot_p_inoc_scaffold_78

Search features with annotation key words

Displaying items 1-30 of 209 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_78_1
Kingella denitrificans, Kingella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..866
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Kingella denitrificans ATCC 33394 RepID=F0EZ48_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:EGC17474.1}; TaxID=888741 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella.;" source="Kingella denitrificans ATCC
hypothetical protein
scnpilot_p_inoc_scaffold_78_2
Pectobacterium betavasculorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

885..1103
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:KFX03540.1}; TaxID=55207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacteri
scnpilot_p_inoc_scaffold_78_3
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1156..2163
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S31_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD86442.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eur
scnpilot_p_inoc_scaffold_78_4
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2750..3292
DNA (543bp) protein (181aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hy
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000361A69B
RNA pyrophosphohydrolase
scnpilot_p_inoc_scaffold_78_5
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3373..3579
DNA (207bp) protein (69aa)
BFD-like (2Fe-2S) binding domain superfamily protein n=2 Tax=Stenotrophomonas RepID=B8L813_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFN47734.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas compost
bacterioferritin ferredoxin protein
scnpilot_p_inoc_scaffold_78_6
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3789..4259
DNA (471bp) protein (157aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Aren
bacterioferritin n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A5BB6
bacterioferritin
scnpilot_p_inoc_scaffold_78_7
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4325..6685)
DNA (2361bp) protein (787aa)
histidine kinase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4C0B3
two-component system sensory histidine kinase
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_p_inoc_scaffold_78_8
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6693..9455)
DNA (2763bp) protein (921aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase id=2976991 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
two-component system response regulator protein, putative signal protein with GGDEF, EAL and two component receiver domains Tax=GWF1_Xanthomonadales_69_6_curated
GGDEF signaling protein
scnpilot_p_inoc_scaffold_78_9
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9510..10046)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364E732
Membrane protein {ECO:0000313|EMBL:KGI76761.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
scnpilot_p_inoc_scaffold_78_10
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10051..10764
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SUA3_XANCT
Uncharacterized protein {ECO:0000313|EMBL:GAN45037.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibact
hypothetical protein
scnpilot_p_inoc_scaffold_78_11
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10751..11203
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000365B4AA
Uncharacterized protein {ECO:0000313|EMBL:GAN45036.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibact
hypothetical protein
scnpilot_p_inoc_scaffold_78_12
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11265..11633
DNA (369bp) protein (123aa)
iron--sulfur cluster insertion protein ErpA n=1 Tax=Dyella ginsengisoli RepID=UPI000344FEFE
iron--sulfur cluster insertion protein erpA; K15724 iron-sulfur cluster insertion protein Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
Iron-sulfur cluster assembly accessory protein
scnpilot_p_inoc_scaffold_78_13
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11667..12626
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364CA06 rbh
NUDIX hydrolase {ECO:0000313|EMBL:KGI76765.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
NUDIX hydrolase
scnpilot_p_inoc_scaffold_78_14
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12689..13567
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D1ACD
Uncharacterized protein {ECO:0000313|EMBL:GAN45033.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibact
membrane protein required for beta-lactamase induction
scnpilot_p_inoc_scaffold_78_15
unknown

Not on your lists

comp(13647..16547)
DNA (2901bp) protein (967aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_78_16
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16790..18001
DNA (1212bp) protein (404aa)
YD repeat-containing protein n=1 Tax=Alishewanella agri BL06 RepID=I9P4I4_9ALTE
YD repeat-containing protein {ECO:0000313|EMBL:EIW89892.1}; TaxID=1195246 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewane
YD repeat protein
scnpilot_p_inoc_scaffold_78_17
unknown

Not on your lists

17998..18357
DNA (360bp) protein (120aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_78_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18650..19558
DNA (909bp) protein (303aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2N1_9GAMM rbh
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprop
scnpilot_p_inoc_scaffold_78_19
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19581..20024)
DNA (444bp) protein (148aa)
hypothetical protein
Putative uncharacterized protein id=3038364 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Stenotrophomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_p_inoc_scaffold_78_20
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20107..22869)
DNA (2763bp) protein (921aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC86968.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxantho
Serine/threonine protein kinase id=2862879 bin=GWF1_Xanthomonadales_69_6 species=Frateuria aurantia genus=Frateuria taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
protein kinase
scnpilot_p_inoc_scaffold_78_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22873..23436)
DNA (564bp) protein (188aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P44_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
ECF subfamily RNA polymerase sigma-24 factor Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
scnpilot_p_inoc_scaffold_78_22
unknown

Not on your lists

23627..24385
DNA (759bp) protein (253aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_78_23
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24537..27305
DNA (2769bp) protein (923aa)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I n=1 Tax=Dyella ginsengisoli RepID=UPI00037C8D09 rbh
DNA polymerase I {ECO:0000313|EMBL:GAN44936.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sedi
scnpilot_p_inoc_scaffold_78_24
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27562..28953)
DNA (1392bp) protein (464aa)
AMP-ligase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGM5_9GAMM
AMP-ligase {ECO:0000313|EMBL:GAN45030.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.
acyl-CoA synthetase/AMP-acid ligase
scnpilot_p_inoc_scaffold_78_25
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28962..29513)
DNA (552bp) protein (184aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852,
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376DF98
tRNA threonylcarbamoyladenosine biosynthesis protein RimN
scnpilot_p_inoc_scaffold_78_26
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29513..32044)
DNA (2532bp) protein (844aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1475481 species="Bacteria; Proteobac
DNA topoisomerase 1 n=1 Tax=Rhodanobacter denitrificans RepID=M4NIH6_9GAMM rbh
DNA topoisomerase I
scnpilot_p_inoc_scaffold_78_27
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32219..33358)
DNA (1140bp) protein (380aa)
DNA protecting protein DprA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXT8_9GAMM
DNA protecting protein DprA {ECO:0000313|EMBL:EIL92029.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobact
DNA protecting protein DprA
scnpilot_p_inoc_scaffold_78_28
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33474..34631)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000366FEA6 rbh
Peptidoglycan-binding protein {ECO:0000313|EMBL:GAN45891.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugak
LysM domain-containing protein
scnpilot_p_inoc_scaffold_78_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34956..35477
DNA (522bp) protein (174aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003667B71
peptide deformylase
scnpilot_p_inoc_scaffold_78_30
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35481..36434
DNA (954bp) protein (318aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=345309 species="B
Methionyl-tRNA formyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VLP4_9GAMM
methionyl-tRNA formyltransferase
Displaying items 1-30 of 209 in total

View Taxonomy