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scnpilot_p_inoc_scaffold_1898

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1898_1

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1..1176
DNA (1176bp) protein (392aa)
Elongation factor Tu n=2 Tax=Bacteria RepID=B8PZT8_9BACT rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=504464 species="Bacteria; candidate division WS6; environme
translation elongation factor TU
scnpilot_p_inoc_scaffold_1898_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1257..1646
DNA (390bp) protein (130aa)
Protein translocase subunit SecE n=2 Tax=Rhodanobacter RepID=I4WGB0_9GAMM
preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella ji
scnpilot_p_inoc_scaffold_1898_3
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1654..2214
DNA (561bp) protein (187aa)
transcription antitermination protein nusG
Transcription antitermination protein nusG id=2468504 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1384054 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomon
scnpilot_p_inoc_scaffold_1898_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2372..2800
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVI1_PSEUU
50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseu
scnpilot_p_inoc_scaffold_1898_5

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2804..3505
DNA (702bp) protein (234aa)
50s ribosomal protein l1 n=1 Tax=mine drainage metagenome RepID=T0ZAT5_9ZZZZ
50s ribosomal protein l1 {ECO:0000313|EMBL:EQD42178.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein L1
scnpilot_p_inoc_scaffold_1898_6
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3840..4364
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036394D4
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Ole
50S ribosomal protein L10
scnpilot_p_inoc_scaffold_1898_7
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4415..4792
DNA (378bp) protein (126aa)
50S ribosomal protein L7 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6CC02
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimona
50S ribosomal protein L7/L12
scnpilot_p_inoc_scaffold_1898_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5013..9173
DNA (4161bp) protein (1387aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Rudaea cellulosilytica RepID=UPI000370045F rbh
scnpilot_p_inoc_scaffold_1898_9
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9200..13396
DNA (4197bp) protein (1399aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Rudaea cellulosilytica RepID=UPI0003718CD2
scnpilot_p_inoc_scaffold_1898_10
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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13588..13962
DNA (375bp) protein (125aa)
30S ribosomal protein S12 id=2468511 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=GWF1_Xanthomonadales_69_6_curated
30S ribosomal protein S12
scnpilot_p_inoc_scaffold_1898_11
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13989..14456
DNA (468bp) protein (156aa)
30S ribosomal protein S7 n=3 Tax=Xanthomonas oryzae pv. oryzae RepID=RS7_XANOM
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=92824 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas ca
scnpilot_p_inoc_scaffold_1898_12
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14475..16565
DNA (2091bp) protein (697aa)
Translation elongation factor 2 (EF-2/EF-G) n=5 Tax=mine drainage metagenome RepID=T1CGF9_9ZZZZ
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonad
fusA; elongation factor G
scnpilot_p_inoc_scaffold_1898_13

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16655..16786
DNA (132bp) protein (44aa)
Translation elongation factor Tu (Fragment) n=3 Tax=mine drainage metagenome RepID=T1B1M0_9ZZZZ
Translation elongation factor Tu {ECO:0000313|EMBL:EQD60710.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.
translation elongation factor 1A (EF-1A/EF-Tu)
Displaying 13 items

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