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scnpilot_p_inoc_scaffold_1074_2

Organism: SCNpilot_P_inoc_Novosphingobium_63_5

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(819..1283)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6E7_SPHWW similarity UNIREF
DB: UNIREF100
  • Identity: 59.5
  • Coverage: 153.0
  • Bit_score: 188
  • Evalue 3.90e-45
Extracytoplasmic-function sigma-70 factor {ECO:0000313|EMBL:AKH44130.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter. similarity UNIPROT
DB: UniProtKB
  • Identity: 68.0
  • Coverage: 153.0
  • Bit_score: 217
  • Evalue 1.40e-53
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 60.1
  • Coverage: 153.0
  • Bit_score: 189
  • Evalue 6.40e-46

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Taxonomy

Altererythrobacter atlanticus → Altererythrobacter → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 465
TTGCGCTTCTTCGCGGCGCGCGGTGCGGGCGAGAGTGCGGAGGATTTGCTGCATGAGGTCTGGCTGAAGATCAGCGCGGCTCAGACCGGGCCGATTTCCTCGCCCATGTCCTATCTGTTCCGCACGGCGGACCTGCTGATGATCGATCGCTATCGCTCAACCCGGCAGGCGGAAAAGCGCGAGAAGGACTGGGTCGATACGACCGGGGGCGCGGTTCCCGGTGTTTCTGACGCTCCCTCGCCGGACCGGGCGATCATTGCCCGCCAGCAGGCTCGTCTGGTGGCGGAGACACTTGCCGCGCTGGGCGAAAGGCAATCCGCGATCTTCCGCAGGCACAGGGTCGATGGCGTTCCGCAGCGGCAGGTGGCGGAGGAATTCGGCGTGAGCCTGAGCACTGTGGAGAGCGATCTTCGCGCTGCGTATCGCGCGCTGGCACGGCTGAAGGAAAAAATTGATGAGGAATGA
PROTEIN sequence
Length: 155
LRFFAARGAGESAEDLLHEVWLKISAAQTGPISSPMSYLFRTADLLMIDRYRSTRQAEKREKDWVDTTGGAVPGVSDAPSPDRAIIARQQARLVAETLAALGERQSAIFRRHRVDGVPQRQVAEEFGVSLSTVESDLRAAYRALARLKEKIDEE*