ggKbase home page
Advanced Search
Search Help

SCNpilot_P_inoc_Novosphingobium_63_5

SCNpilot_P_inoc_Sphingomonadales_63_6
In projects: SCNpilot_P_inoc  |  SCN_92

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK Curated version: scnpilot_dereplicated_Sphingomonadales_1

Properties

Avg. coverage: 5.56 Longest contig: 100.14 Kbp Bin length: 3.52 Mbp GC content: 62.50 %
Contigs count: 210 Features count: 3441 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38

Description

highly fragmented

Displaying items 1-50 of 210 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_844
Order: Sphingomonadales (91.67%)
96 100137 bp 63.34 6.01 92.14
scnpilot_p_inoc_scaffold_735
Order: Sphingomonadales (83.58%)
67 65022 bp 61.85 5.72 92.15
scnpilot_p_inoc_scaffold_1430
Order: Sphingomonadales (62.3%)
61 48436 bp 62.86 5.49 89.09
scnpilot_p_inoc_scaffold_715
Order: Sphingomonadales (76.67%)
60 62418 bp 61.27 5.43 87.03
scnpilot_p_inoc_scaffold_562
Order: Sphingomonadales (76.36%)
55 62282 bp 61.10 5.52 86.71
scnpilot_p_inoc_scaffold_1007
Order: Sphingomonadales (88.89%)
54 58100 bp 61.86 5.57 89.13
scnpilot_p_inoc_scaffold_1207
Order: Sphingomonadales (92.16%)
51 45072 bp 62.54 5.26 90.74
scnpilot_p_inoc_scaffold_654
Order: Sphingomonadales (94.12%)
51 52658 bp 64.04 5.70 91.31
scnpilot_p_inoc_scaffold_761
Order: Sphingomonadales (85.11%)
47 44018 bp 63.52 5.75 85.55
scnpilot_p_inoc_scaffold_890
Class: Alphaproteobacteria (60.87%)
46 36189 bp 59.85 5.80 87.53
scnpilot_p_inoc_scaffold_915
Order: Sphingomonadales (84.44%)
45 54105 bp 62.25 5.51 93.57
scnpilot_p_inoc_scaffold_790
Genus: Novosphingobium (50%)
44 42453 bp 61.69 5.41 90.76
scnpilot_p_inoc_scaffold_1208
Genus: Novosphingobium (65.91%)
44 44580 bp 64.50 5.80 90.78
scnpilot_p_inoc_scaffold_860
Order: Sphingomonadales (93.18%)
44 54755 bp 62.53 5.50 93.22
scnpilot_p_inoc_scaffold_1837
Order: Sphingomonadales (90.91%)
44 43707 bp 63.05 5.57 88.65
scnpilot_p_inoc_scaffold_680
Order: Sphingomonadales (79.07%)
43 56385 bp 61.42 5.50 89.89
scnpilot_p_inoc_scaffold_952
Order: Sphingomonadales (85.37%)
41 33540 bp 62.62 5.42 83.16
scnpilot_p_inoc_scaffold_1655
Order: Sphingomonadales (92.31%)
39 29594 bp 62.81 5.82 89.52
scnpilot_p_inoc_scaffold_816
Order: Sphingomonadales (89.47%)
38 40229 bp 62.59 5.60 93.42
scnpilot_p_inoc_scaffold_2173
Species: Altererythrobacter atlanticus (50%)
38 40165 bp 62.82 5.65 90.46
scnpilot_p_inoc_scaffold_809
Species: Sphingobium lactosutens (50%)
36 40511 bp 63.56 5.14 93.86
scnpilot_p_inoc_scaffold_1144
Order: Sphingomonadales (91.43%)
35 30687 bp 62.82 5.71 91.77
scnpilot_p_inoc_scaffold_806
Order: Sphingomonadales (68.57%)
35 43428 bp 58.89 5.81 87.40
scnpilot_p_inoc_scaffold_847
Order: Sphingomonadales (71.43%)
35 39841 bp 62.56 5.82 90.72
scnpilot_p_inoc_scaffold_1082
Order: Sphingomonadales (91.43%)
35 34148 bp 60.64 5.69 95.43
scnpilot_p_inoc_scaffold_1717
Order: Sphingomonadales (70.59%)
34 24519 bp 62.33 5.65 92.59
scnpilot_p_inoc_scaffold_869
Order: Sphingomonadales (87.88%)
33 37264 bp 62.92 5.56 92.85
scnpilot_p_inoc_scaffold_926
Order: Sphingomonadales (78.79%)
33 34315 bp 61.71 5.60 89.24
scnpilot_p_inoc_scaffold_1343
Order: Sphingomonadales (90.63%)
32 35289 bp 62.81 5.54 92.89
scnpilot_p_inoc_scaffold_2028
Genus: Novosphingobium (53.33%)
30 16683 bp 62.25 5.73 90.69
scnpilot_p_inoc_scaffold_1172
Order: Sphingomonadales (100%)
30 30950 bp 62.24 5.34 94.43
scnpilot_p_inoc_scaffold_1069
Order: Sphingomonadales (93.33%)
30 28981 bp 62.62 5.41 93.76
scnpilot_p_inoc_scaffold_1897
Order: Sphingomonadales (70%)
30 26512 bp 60.81 5.69 84.35
scnpilot_p_inoc_scaffold_797
Order: Sphingomonadales (86.21%)
29 41697 bp 64.14 6.07 91.94
scnpilot_p_inoc_scaffold_1621
Order: Sphingomonadales (89.29%)
28 36469 bp 63.13 6.33 93.38
scnpilot_p_inoc_scaffold_1142
Order: Sphingomonadales (81.48%)
27 26671 bp 62.02 5.36 90.84
scnpilot_p_inoc_scaffold_1555
Order: Sphingomonadales (96.15%)
26 19102 bp 59.53 5.52 91.23
scnpilot_p_inoc_scaffold_1099
Genus: Novosphingobium (50%)
26 27915 bp 61.82 5.34 94.53
scnpilot_p_inoc_scaffold_1171
Genus: Novosphingobium (60%)
25 25714 bp 62.51 5.38 90.77
scnpilot_p_inoc_scaffold_1268
Order: Sphingomonadales (92%)
25 23813 bp 60.98 5.33 90.49
scnpilot_p_inoc_scaffold_4049
Order: Sphingomonadales (100%)
25 24216 bp 64.78 5.92 93.35
scnpilot_p_inoc_scaffold_1062
Order: Sphingomonadales (56%)
25 29090 bp 59.99 6.11 85.82
scnpilot_p_inoc_scaffold_967
Order: Sphingomonadales (96%)
25 33090 bp 62.59 5.27 90.69
scnpilot_p_inoc_scaffold_1400
Species: Novosphingobium tardaugens (54.17%)
24 21408 bp 63.20 5.65 94.03
scnpilot_p_inoc_scaffold_1219
Species: Altererythrobacter atlanticus (62.5%)
24 24826 bp 62.13 5.47 90.49
scnpilot_p_inoc_scaffold_2626
Order: Sphingomonadales (100%)
23 12043 bp 60.94 5.46 88.73
scnpilot_p_inoc_scaffold_1039
Genus: Novosphingobium (56.52%)
23 29899 bp 63.24 6.28 91.48
scnpilot_p_inoc_scaffold_1434
Order: Sphingomonadales (95.45%)
22 20878 bp 60.58 5.22 93.87
scnpilot_p_inoc_scaffold_909
Order: Sphingomonadales (81.82%)
22 35252 bp 60.41 5.49 90.68
scnpilot_p_inoc_scaffold_1074
Species: Altererythrobacter atlanticus (63.64%)
22 28896 bp 63.98 5.86 94.99
Displaying items 1-50 of 210 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.