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scnpilot_dereplicated_Sphingomonadales_1

scnpilot-dereplicated_Sphingomonadales_62_1
In projects: scnpilot-dereplicated  |  SCNpilot_P_inoc  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Auto curated genome
Original version: SCNpilot_P_inoc_Novosphingobium_63_5

Properties

Avg. coverage: 1.00 Longest contig: 100.13 Kbp Bin length: 3.51 Mbp GC content: 62.35 %
Contigs count: 210 Features count: 3436 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Displaying items 1-50 of 210 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_844_curated
Order: Sphingomonadales (88.89%)
100 100134 bp 63.14 1.00 89.35
scnpilot_p_inoc_scaffold_735_curated
Order: Sphingomonadales (86.15%)
65 64829 bp 61.75 1.00 90.44
scnpilot_p_inoc_scaffold_1430_curated
Order: Sphingomonadales (64.52%)
63 48373 bp 62.75 1.00 89.94
scnpilot_p_inoc_scaffold_715_curated
Order: Sphingomonadales (77.97%)
60 62415 bp 61.26 1.00 86.83
scnpilot_p_inoc_scaffold_562_curated
Order: Sphingomonadales (77.78%)
55 62279 bp 61.09 1.00 86.71
scnpilot_p_inoc_scaffold_1007_curated
Order: Sphingomonadales (92.31%)
54 58097 bp 61.83 1.00 89.93
scnpilot_p_inoc_scaffold_654_curated
Order: Sphingomonadales (97.96%)
51 52655 bp 64.04 1.00 91.32
scnpilot_p_inoc_scaffold_1207_curated
Order: Sphingomonadales (95.83%)
49 44924 bp 62.48 1.00 89.42
scnpilot_p_inoc_scaffold_761_curated
Order: Sphingomonadales (82.98%)
47 44015 bp 63.47 1.00 86.98
scnpilot_p_inoc_scaffold_890_curated
Class: Alphaproteobacteria (62.22%)
46 36186 bp 59.85 1.00 88.35
scnpilot_p_inoc_scaffold_860_curated
Order: Sphingomonadales (88.89%)
45 54752 bp 62.12 1.00 88.88
scnpilot_p_inoc_scaffold_1837_curated
Order: Sphingomonadales (88.89%)
45 43704 bp 62.61 1.00 87.87
scnpilot_p_inoc_scaffold_915_curated
Order: Sphingomonadales (82.22%)
45 54061 bp 62.04 1.00 92.23
scnpilot_p_inoc_scaffold_790_curated
Order: Sphingomonadales (93.33%)
45 42354 bp 61.41 1.00 88.65
scnpilot_p_inoc_scaffold_1208_curated
Genus: Novosphingobium (65.12%)
44 44537 bp 64.34 1.00 90.55
scnpilot_p_inoc_scaffold_680_curated
Order: Sphingomonadales (79.07%)
43 56324 bp 61.35 1.00 89.91
scnpilot_p_inoc_scaffold_952_curated
Order: Sphingomonadales (87.5%)
41 33454 bp 62.61 1.00 83.12
scnpilot_p_inoc_scaffold_1655_curated
Order: Sphingomonadales (92.31%)
39 29591 bp 62.73 1.00 89.52
scnpilot_p_inoc_scaffold_2173_curated
Species: Altererythrobacter atlanticus (51.28%)
39 40136 bp 62.31 1.00 87.18
scnpilot_p_inoc_scaffold_816_curated
Order: Sphingomonadales (89.19%)
37 40226 bp 62.59 1.00 92.86
scnpilot_p_inoc_scaffold_1144_curated
Order: Sphingomonadales (91.43%)
35 30642 bp 62.66 1.00 91.77
scnpilot_p_inoc_scaffold_809_curated
Species: Sphingobium lactosutens (51.43%)
35 40141 bp 63.53 1.00 93.77
scnpilot_p_inoc_scaffold_926_curated
Order: Sphingomonadales (77.14%)
35 34104 bp 61.45 1.00 88.92
scnpilot_p_inoc_scaffold_806_curated
Order: Sphingomonadales (69.7%)
34 43425 bp 58.78 1.00 85.01
scnpilot_p_inoc_scaffold_1717_curated
Order: Sphingomonadales (70.59%)
34 24484 bp 62.29 1.00 92.19
scnpilot_p_inoc_scaffold_1082_curated
Order: Sphingomonadales (91.18%)
34 34123 bp 60.47 1.00 94.87
scnpilot_p_inoc_scaffold_847_curated
Order: Sphingomonadales (72.73%)
33 39547 bp 62.44 1.00 89.38
scnpilot_p_inoc_scaffold_1343_curated
Order: Sphingomonadales (84.85%)
33 35286 bp 62.66 1.00 91.91
scnpilot_p_inoc_scaffold_869_curated
Order: Sphingomonadales (90.63%)
32 37028 bp 62.87 1.00 92.93
scnpilot_p_inoc_scaffold_1172_curated
Order: Sphingomonadales (96.77%)
31 30947 bp 62.22 1.00 95.21
scnpilot_p_inoc_scaffold_1069_curated
Order: Sphingomonadales (93.33%)
30 28978 bp 62.59 1.00 93.46
scnpilot_p_inoc_scaffold_1897_curated
Order: Sphingomonadales (72.41%)
30 26509 bp 60.59 1.00 84.34
scnpilot_p_inoc_scaffold_797_curated
Order: Sphingomonadales (86.21%)
29 41661 bp 64.01 1.00 91.66
scnpilot_p_inoc_scaffold_2028_curated
Genus: Novosphingobium (57.14%)
28 16640 bp 62.09 1.00 86.88
scnpilot_p_inoc_scaffold_1621_curated
Order: Sphingomonadales (89.29%)
28 36464 bp 63.12 1.00 93.30
scnpilot_p_inoc_scaffold_1142_curated
Order: Sphingomonadales (81.48%)
27 26633 bp 62.04 1.00 90.74
scnpilot_p_inoc_scaffold_1099_curated
Genus: Novosphingobium (52%)
26 27888 bp 61.83 1.00 94.52
scnpilot_p_inoc_scaffold_1268_curated
Order: Sphingomonadales (96%)
26 23821 bp 60.98 1.00 91.09
scnpilot_p_inoc_scaffold_1555_curated
Order: Sphingomonadales (96.15%)
26 19065 bp 59.50 1.00 91.22
scnpilot_p_inoc_scaffold_1171_curated
Genus: Novosphingobium (62.5%)
25 25711 bp 62.51 1.00 91.23
scnpilot_p_inoc_scaffold_967_curated
Order: Sphingomonadales (100%)
25 33087 bp 62.18 1.00 90.46
scnpilot_p_inoc_scaffold_1062_curated
Order: Sphingomonadales (60.87%)
24 29012 bp 59.96 1.00 85.29
scnpilot_p_inoc_scaffold_1400_curated
Species: Novosphingobium tardaugens (54.17%)
24 21321 bp 63.18 1.00 94.01
scnpilot_p_inoc_scaffold_1219_curated
Species: Altererythrobacter atlanticus (62.5%)
24 24823 bp 62.13 1.00 90.53
scnpilot_p_inoc_scaffold_4049_curated
Order: Sphingomonadales (100%)
24 24179 bp 64.56 1.00 93.06
scnpilot_p_inoc_scaffold_2626_curated
Order: Sphingomonadales (91.3%)
23 11967 bp 60.88 1.00 88.67
scnpilot_p_inoc_scaffold_1039_curated
Genus: Novosphingobium (56.52%)
23 29896 bp 63.24 1.00 91.53
scnpilot_p_inoc_scaffold_1076_curated
Order: Sphingomonadales (63.64%)
22 28677 bp 63.53 1.00 93.93
scnpilot_p_inoc_scaffold_1074_curated
Species: Altererythrobacter atlanticus (63.64%)
22 28844 bp 63.97 1.00 95.16
scnpilot_p_inoc_scaffold_909_curated
Order: Sphingomonadales (81.82%)
22 35230 bp 60.43 1.00 90.66
Displaying items 1-50 of 210 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.