ggKbase home page

scnpilot_p_inoc_scaffold_909_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_909_curated_1
unknown

Not on your lists

comp(3..152)
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_909_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163..1281)
DNA (1119bp) protein (373aa)
FAD-dependent urate hydroxylase {ECO:0000313|EMBL:AKH42884.1}; EC=1.14.13.113 {ECO:0000313|EMBL:AKH42884.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II00_9SPHN
hypothetical protein
scnpilot_p_inoc_scaffold_909_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1303..2208)
DNA (906bp) protein (302aa)
Biphenyl-2,3-diol 1,2-dioxygenase {ECO:0000313|EMBL:AKH42883.1}; EC=1.13.11.39 {ECO:0000313|EMBL:AKH42883.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Glyoxalase-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKY6_9SPHN
glyoxalase-family protein
scnpilot_p_inoc_scaffold_909_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2286..4754)
DNA (2469bp) protein (823aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKY7_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK67539.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_909_curated_5
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4883..6334)
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036D2F5D
PepSY-associated tm helix domain protein {ECO:0000313|EMBL:EIZ79873.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
PepSY-associated TM helix domain-containing protein
scnpilot_p_inoc_scaffold_909_curated_6
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6349..8505)
DNA (2157bp) protein (719aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036ECAA8
TonB-dependent receptor {ECO:0000313|EMBL:KHA65591.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
Putative TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_909_curated_7
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8952..10277)
DNA (1326bp) protein (442aa)
Lipolytic protein G-D-S-L family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SW94_CAUSK
Lysophospholipase L1 {ECO:0000313|EMBL:EZP54215.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
GDSL family lipase
scnpilot_p_inoc_scaffold_909_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10388..12517)
DNA (2130bp) protein (710aa)
TonB-dependent receptor n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VEG0_CAUST
Pesticin receptor {ECO:0000313|EMBL:AKH41402.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor
scnpilot_p_inoc_scaffold_909_curated_9
Hyphomonas beringensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12697..14058
DNA (1362bp) protein (454aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026K4_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:KCZ55443.1}; TaxID=1280946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas beringensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_909_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14097..15179
DNA (1083bp) protein (361aa)
Acetyl esterase {ECO:0000313|EMBL:AKH41405.1}; EC=3.1.1.- {ECO:0000313|EMBL:AKH41405.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Alpha/beta hydrolase domain-containing protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UXT0_TERSS
alpha/beta hydrolase domain-containing protein
scnpilot_p_inoc_scaffold_909_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15306..17033)
DNA (1728bp) protein (576aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMJ8_9SPHN
putative hydrolase; K07047
Putative hydrolase {ECO:0000313|EMBL:BAK67787.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_909_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17051..18778)
DNA (1728bp) protein (576aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMJ9_9SPHN
hypothetical protein; K07047
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67788.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_909_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18948..20648)
DNA (1701bp) protein (567aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMJ9_9SPHN
hypothetical protein; K07047
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67788.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_909_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20691..22073)
DNA (1383bp) protein (461aa)
Gamma-aminobutyrate permease n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMK0_9SPHN
gabP; gamma-aminobutyrate permease; K03293 amino acid transporter, AAT family
Gamma-aminobutyrate permease {ECO:0000313|EMBL:BAK67789.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_909_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22107..23564)
DNA (1458bp) protein (486aa)
gabD; succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate-semialdehyde dehydrogenase [NADP+] {ECO:0000313|EMBL:BAK67790.1}; EC=1.2.1.16 {ECO:0000313|EMBL:BAK67790.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Succinate-semialdehyde dehydrogenase [NADP+] n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMK1_9SPHN
scnpilot_p_inoc_scaffold_909_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23588..24865)
DNA (1278bp) protein (426aa)
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:BAK67791.1}; EC=2.6.1.19 {ECO:0000313|EMBL:BAK67791.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
4-aminobutyrate aminotransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMK2_9SPHN
gabT; 4-aminobutyrate aminotransferase
scnpilot_p_inoc_scaffold_909_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24951..27524)
DNA (2574bp) protein (858aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMK3_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK67792.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_909_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27780..28700
DNA (921bp) protein (307aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMK4_9SPHN
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:BAK67793.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_909_curated_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28704..29138)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037B2FD9
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:AFL50611.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
scnpilot_p_inoc_scaffold_909_curated_20
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29253..30032
DNA (780bp) protein (260aa)
Methyltransferase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BR79_GRABC
Ubiquinone biosynthesis protein UbiE {ECO:0000313|EMBL:KKC23931.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
scnpilot_p_inoc_scaffold_909_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30255..32861
DNA (2607bp) protein (869aa)
hypothetical protein n=1 Tax=Teredinibacter turnerae RepID=UPI0003644DC8
G8 domain protein {ECO:0000313|EMBL:AKH44110.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
transmembrane domain-containing protein
scnpilot_p_inoc_scaffold_909_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34035..35228)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI0003803160
Putative permease {ECO:0000313|EMBL:EJL72177.1}; Flags: Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Displaying 22 items

View Taxonomy