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scnpilot_p_inoc_scaffold_915_curated

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_915_curated_1
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1007
DNA (1005bp) protein (335aa)
signal transduction histidine kinase; K14986 two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
histidine kinase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024897AE
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_p_inoc_scaffold_915_curated_2
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1004..1624
DNA (621bp) protein (207aa)
Chemotaxis protein CheY n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0IAV0_9SPHN
Response regulator FixJ {ECO:0000313|EMBL:KEO91357.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
NarL family two-component system response regulator; K14987 two-component system, LuxR family, response regulator FixJ
scnpilot_p_inoc_scaffold_915_curated_3
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1646..2005)
DNA (360bp) protein (120aa)
UPI0003D61FB2 related cluster n=1 Tax=unknown RepID=UPI0003D61FB2
Uncharacterized protein {ECO:0000313|EMBL:ETI60242.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
scnpilot_p_inoc_scaffold_915_curated_4
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2161..2973
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002F207AF
UspA domain-containing protein
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_915_curated_5
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3072..4091
DNA (1020bp) protein (340aa)
ptcA; putrescine carbamoyltransferase (EC:2.1.3.6); K13252 putrescine carbamoyltransferase [EC:2.1.3.6]
Ornithine carbamoyltransferase {ECO:0000256|SAAS:SAAS00106174}; EC=2.1.3.3 {ECO:0000256|SAAS:SAAS00106174};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Putrescine carbamoyltransferase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J9E7_HYPSM
scnpilot_p_inoc_scaffold_915_curated_6
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4109..5518
DNA (1410bp) protein (470aa)
Amino acid permease-associated region n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JAY2_HYPSM
amino acid permease
Amino acid permease-associated region {ECO:0000313|EMBL:CCB66299.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
scnpilot_p_inoc_scaffold_915_curated_7
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5511..6632
DNA (1122bp) protein (374aa)
aguA; agmatine deiminase (EC:3.5.3.12); K10536 agmatine deiminase [EC:3.5.3.12]
Porphyromonas-type peptidyl-arginine deiminase family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WDU8_9CAUL
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
scnpilot_p_inoc_scaffold_915_curated_8
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6634..7536
DNA (903bp) protein (301aa)
ybcF; carbamate kinase; K00926 carbamate kinase [EC:2.7.2.2]
Carbamate kinase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JAY0_HYPSM
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
scnpilot_p_inoc_scaffold_915_curated_9
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7543..8241)
DNA (699bp) protein (233aa)
CRP/FNR family transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NRF1_AZOS1
fnr; CRP/FNR family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein
CRP/FNR family transcriptional regulator {ECO:0000313|EMBL:BAI70980.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
scnpilot_p_inoc_scaffold_915_curated_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8388..8948
DNA (561bp) protein (187aa)
nitroreductase n=2 Tax=Pseudomonas RepID=UPI000372E134
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
scnpilot_p_inoc_scaffold_915_curated_11
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9274..10110
DNA (837bp) protein (279aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Novosphingobium sp. AP12 RepID=J2P4D4_9SPHN
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJL21872.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
alpha/beta hydrolase fold protein
scnpilot_p_inoc_scaffold_915_curated_12
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10176..11105)
DNA (930bp) protein (310aa)
UPI0003D5AABC related cluster n=1 Tax=unknown RepID=UPI0003D5AABC
LysR family transcriptional regulator {ECO:0000313|EMBL:ETI60299.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_915_curated_13
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11218..11916
DNA (699bp) protein (233aa)
Pirin n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IQM4_9SPHN
Pirin {ECO:0000313|EMBL:EQB31125.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
Pirin domain-containing protein; K06911
scnpilot_p_inoc_scaffold_915_curated_14
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11952..12488)
DNA (537bp) protein (179aa)
chemotaxis protein CheY n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6A684
Response regulator receiver protein {ECO:0000313|EMBL:EGD57194.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Fis family two component transcriptional regulator
scnpilot_p_inoc_scaffold_915_curated_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12485..13771)
DNA (1287bp) protein (429aa)
histidine kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
histidine kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B47E9E
Sensor histidine kinase prrB {ECO:0000313|EMBL:GAO55521.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
scnpilot_p_inoc_scaffold_915_curated_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13768..14478)
DNA (711bp) protein (237aa)
surfeit locus 1 family protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B652E5
Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion {ECO:0000313|EMBL:GAO55522.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_915_curated_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14475..14879)
DNA (405bp) protein (135aa)
cytochrome O ubiquinol oxidase n=1 Tax=Rhizobium loti RepID=UPI000381C53A
Cytochrome O ubiquinol oxidase subunit IV {ECO:0000313|EMBL:GAO55523.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome o ubiquinol oxidase subunit IV
scnpilot_p_inoc_scaffold_915_curated_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14876..15517)
DNA (642bp) protein (214aa)
cytochrome o ubiquinol oxidase subunit III (EC:1.10.3.-); K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
cytochrome O ubiquinol oxidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5A83B
Cytochrome O ubiquinol oxidase subunit III {ECO:0000313|EMBL:GAO55524.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
scnpilot_p_inoc_scaffold_915_curated_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15514..17502)
DNA (1989bp) protein (663aa)
cytochrome O ubiquinol oxidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B50E55
Cytochrome O ubiquinol oxidase subunit I {ECO:0000313|EMBL:GAO55525.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome-c oxidase
scnpilot_p_inoc_scaffold_915_curated_20
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17550..18767)
DNA (1218bp) protein (406aa)
Cytochrome o ubiquinol oxidase subunit II n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDX5_9SPHN
Cytochrome o ubiquinol oxidase subunit II {ECO:0000313|EMBL:EGD57188.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
cytochrome o ubiquinol oxidase subunit II
scnpilot_p_inoc_scaffold_915_curated_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19273..20085
DNA (813bp) protein (271aa)
arabinose ABC transporter permease n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B65EBA
MFS permease {ECO:0000313|EMBL:GAO55527.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator superfamily permease
scnpilot_p_inoc_scaffold_915_curated_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20203..20598
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISL0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66370.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_915_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20743..20940
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISL2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66372.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_915_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20937..21428
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH21_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82983.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09796 hypothetical protein
scnpilot_p_inoc_scaffold_915_curated_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21489..22895)
DNA (1407bp) protein (469aa)
Putative efflux pump outer membrane protein n=1 Tax=Sphingobium sp. SYK-6 PF7_9SPHN">RepID=G2IPF7_9SPHN
putative efflux pump outer membrane protein
Putative efflux pump outer membrane protein {ECO:0000313|EMBL:BAK68138.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_915_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22905..26096)
DNA (3192bp) protein (1064aa)
Putative efflux pump inner membrane protein n=1 Tax=Sphingobium sp. SYK-6 PF6_9SPHN">RepID=G2IPF6_9SPHN
putative efflux pump inner membrane protein
Putative efflux pump inner membrane protein {ECO:0000313|EMBL:BAK68137.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_915_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26118..27374)
DNA (1257bp) protein (419aa)
Putative efflux pump periplasmic linker protein n=1 Tax=Sphingobium sp. SYK-6 PF5_9SPHN">RepID=G2IPF5_9SPHN
putative efflux pump periplasmic linker protein
Putative efflux pump periplasmic linker protein {ECO:0000313|EMBL:BAK68136.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_915_curated_28
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27763..28476)
DNA (714bp) protein (238aa)
Transcriptional regulator, TetR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQV3_SPHAL
Transcriptional regulator, TetR family {ECO:0000313|EMBL:KGB58833.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
TetR family transcriptional regulator
scnpilot_p_inoc_scaffold_915_curated_29
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28517..29875)
DNA (1359bp) protein (453aa)
Alpha,alpha-trehalose-phosphate synthase {ECO:0000313|EMBL:KHS42701.1}; EC=2.4.1.15 {ECO:0000313|EMBL:KHS42701.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15]
Trehalose 6-phosphate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G877_NOVAD
scnpilot_p_inoc_scaffold_915_curated_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29872..31656)
DNA (1785bp) protein (595aa)
glucoamylase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287E33B
Glucoamylase {ECO:0000313|EMBL:AIT06132.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
glycoside hydrolase 15-like protein
Displaying items 1-30 of 45 in total

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