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scnpilot_p_inoc_scaffold_1172_curated

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1172_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..958
DNA (957bp) protein (319aa)
Chaperone protein ClpB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVN2_9SPHN
ATP-dependent Clp protease ATP-binding subunit ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1172_curated_2
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1066..4095)
DNA (3030bp) protein (1010aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VY05_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:EJU12286.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
TonB-dependent receptor
scnpilot_p_inoc_scaffold_1172_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4394..5176
DNA (783bp) protein (261aa)
3-oxoacyl-[acyl-carrier-protein] reductase FabG1 {ECO:0000313|EMBL:AKH42454.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AKH42454.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9F8_NOVAD
short-chain dehydrogenase/reductase SDR
scnpilot_p_inoc_scaffold_1172_curated_4
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5203..5826
DNA (624bp) protein (208aa)
TetR family transcriptional regulator n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IUZ3_9SPHN
TetR family transcriptional regulator {ECO:0000313|EMBL:EQB13504.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
TetR family transcriptional regulator
scnpilot_p_inoc_scaffold_1172_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5823..6692
DNA (870bp) protein (290aa)
S-methyl-5'-thioadenosine phosphorylase {ECO:0000313|EMBL:AKH42453.1}; EC=2.4.2.28 {ECO:0000313|EMBL:AKH42453.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
5''''-methylthioadenosine phosphorylase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7A03B
scnpilot_p_inoc_scaffold_1172_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6786..7286
DNA (501bp) protein (167aa)
Transcriptional regulator marR/emrR family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2ND50_ERYLH
HTH-type transcriptional repressor NicR {ECO:0000313|EMBL:AKH42452.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
transcriptional regulator marR/emrR family protein
scnpilot_p_inoc_scaffold_1172_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7393..8409)
DNA (1017bp) protein (339aa)
Flp pilus assembly protein TadC n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y885_9SPHN
Bacterial type II secretion system protein F domain protein {ECO:0000313|EMBL:AKH42451.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
type II secretion system protein; K12511 tight adherence protein C
scnpilot_p_inoc_scaffold_1172_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8429..9400)
DNA (972bp) protein (324aa)
Flp pilus assembly protein TadB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLX7_9SPHN
Bacterial type II secretion system protein F domain protein {ECO:0000313|EMBL:AKH42450.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K12510 tight adherence protein B
scnpilot_p_inoc_scaffold_1172_curated_9
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9430..10716)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2ND47_ERYLH
hypothetical protein; K02282 pilus assembly protein CpaE
Uncharacterized protein {ECO:0000313|EMBL:ABC62394.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_1172_curated_10
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10719..11378)
DNA (660bp) protein (220aa)
Flp pilus assembly protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVN8_9SPHN
hypothetical protein; K02281 pilus assembly protein CpaD
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1172_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11393..12994)
DNA (1602bp) protein (534aa)
Flp pilus assembly protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLC0_9SPHN
Flp pilus assembly protein {ECO:0000313|EMBL:GAD49430.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
type II secretion system protein; K02280 pilus assembly protein CpaC
scnpilot_p_inoc_scaffold_1172_curated_12
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13056..14084)
DNA (1029bp) protein (343aa)
Pilus assembly protein CpaB n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2ND44_ERYLH
pilus assembly protein CpaB; K02279 pilus assembly protein CpaB
Pilus assembly protein CpaB {ECO:0000313|EMBL:ABC62397.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_1172_curated_13
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14159..14653)
DNA (495bp) protein (165aa)
type IV prepilin peptidase, cpaA; K02278 prepilin peptidase CpaA [EC:3.4.23.43]
peptidase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E4D6
Peptidase {ECO:0000313|EMBL:KEO93369.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
scnpilot_p_inoc_scaffold_1172_curated_14
unknown

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comp(14699..14938)
DNA (240bp) protein (80aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1172_curated_15
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14960..15706
DNA (747bp) protein (249aa)
lysophospholipase L2; K01048 lysophospholipase [EC:3.1.1.5]
Lysophospholipase L2 n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2ND42_ERYLH
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1172_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15714..16808
DNA (1095bp) protein (365aa)
Hydrogen cyanide synthase subunit HcnC {ECO:0000313|EMBL:AKH42443.1}; EC=1.4.99.5 {ECO:0000313|EMBL:AKH42443.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative oxidoreductase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVP3_9SPHN
glycine oxidase
scnpilot_p_inoc_scaffold_1172_curated_17
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16818..17267)
DNA (450bp) protein (150aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ribonuclease HI (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y892_9SPHN
scnpilot_p_inoc_scaffold_1172_curated_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17269..18270)
DNA (1002bp) protein (334aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K02204 homoserine kinase type II [EC:2.7.1.39]
Homoserine kinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLY4_9SPHN
scnpilot_p_inoc_scaffold_1172_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18277..19251)
DNA (975bp) protein (325aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000313|EMBL:AKH42434.1}; EC=1.17.1.2 {ECO:0000313|EMBL:AKH42434.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B78C13
scnpilot_p_inoc_scaffold_1172_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19329..19988
DNA (660bp) protein (220aa)
Uncharacterized protein n=2 Tax=Bacteria RepID=A5PCE3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH42433.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1172_curated_21
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20066..21811
DNA (1746bp) protein (582aa)
argS; arginyl-tRNA synthetase; K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLC9_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1172_curated_22
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21815..22504
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y896_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAD49441.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1172_curated_23
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22596..23621
DNA (1026bp) protein (342aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
beta-N-acetylhexosaminidase (EC:3.2.1.52); K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
Beta-glucosidase-like glycosyl hydrolase n=1 Tax=Novosphingobium sp. AP12 RepID=J2GP59_9SPHN
scnpilot_p_inoc_scaffold_1172_curated_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23618..24448
DNA (831bp) protein (277aa)
Segregation and condensation protein A n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3W1_9SPHN
Segregation and condensation protein A {ECO:0000313|EMBL:AKH42428.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K05896 segregation and condensation protein A
scnpilot_p_inoc_scaffold_1172_curated_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24445..25149
DNA (705bp) protein (235aa)
Segregation and condensation protein B n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECX1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH42427.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
segregation and condensation protein B; K06024 segregation and condensation protein B
scnpilot_p_inoc_scaffold_1172_curated_26
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25183..25422
DNA (240bp) protein (80aa)
Sec-independent protein translocase protein TatA n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WA37_9SPHN
hypothetical protein; K03116 sec-independent protein translocase protein TatA
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_1172_curated_27
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25454..25888
DNA (435bp) protein (145aa)
Sec-independent protein translocase protein TatB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=TATB_NOVAD
Sec-independent protein translocase protein TatB {ECO:0000313|EMBL:AKH42425.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
twin-arginine translocation protein TatB; K03117 sec-independent protein translocase protein TatB
scnpilot_p_inoc_scaffold_1172_curated_28
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25892..26698
DNA (807bp) protein (269aa)
Sec-independent protein translocase protein TatC n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLZ2_9SPHN
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Sec-independent protein translocase TatC; K03118 sec-independent protein translocase protein TatC
scnpilot_p_inoc_scaffold_1172_curated_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26854..28602)
DNA (1749bp) protein (583aa)
N-substituted formamide deformylase {ECO:0000313|EMBL:AKH42422.1}; EC=3.5.1.91 {ECO:0000313|EMBL:AKH42422.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Predicted metal-dependent hydrolase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2ND25_ERYLH
metal-dependent hydrolase; K07047
scnpilot_p_inoc_scaffold_1172_curated_30
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28599..29501)
DNA (903bp) protein (301aa)
2-(Hydroxymethyl)glutarate dehydrogenase {ECO:0000313|EMBL:AKH42421.1}; EC=1.1.1.291 {ECO:0000313|EMBL:AKH42421.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative 3-hydroxyisobutyrate dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVQ2_9SPHN
6-phosphogluconate dehydrogenase
Displaying items 1-30 of 31 in total

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