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scnpilot_p_inoc_scaffold_847_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_847_curated_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1232)
DNA (1230bp) protein (410aa)
assimilatory nitrate reductase (NADH) subunit alpha apoprotein (EC:1.7.1.1); K00372 nitrate reductase catalytic subunit [EC:1.7.99.4]
Putative anaerobic dehydrogenase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AFZ3_9SPHN
Putative anaerobic dehydrogenase {ECO:0000313|EMBL:EJL31311.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
scnpilot_p_inoc_scaffold_847_curated_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2077..2430)
DNA (354bp) protein (118aa)
nitrite reductase (NAD(P)H) large subunit, NirD; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4]
Assimilatory nitrite reductase (NAD(P)H) small subunit {ECO:0000313|EMBL:ABD27402.1}; EC=1.7.1.4 {ECO:0000313|EMBL:ABD27402.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Assimilatory nitrite reductase (NAD(P)H) small subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G421_NOVAD
scnpilot_p_inoc_scaffold_847_curated_3
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2427..4907)
DNA (2481bp) protein (827aa)
nitrite reductase (NAD(P)H) large subunit (EC:1.7.1.4); K00362 nitrite reductase (NAD(P)H) large subunit [EC:1.7.1.4]
Nitrite reductase (NAD(P)H) large subunit n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EE97_9SPHN
Nitrite reductase (NAD(P)H) large subunit {ECO:0000313|EMBL:EHJ60320.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
scnpilot_p_inoc_scaffold_847_curated_4
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5140..6357)
DNA (1218bp) protein (406aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKA7_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_847_curated_5
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6505..8190)
DNA (1686bp) protein (562aa)
ABC transporter ATPase; K15578 nitrate/nitrite transport system ATP-binding protein [EC:3.6.3.-]
ATPase component of various ABC-type transport system n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EE91_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_847_curated_6
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8201..9073)
DNA (873bp) protein (291aa)
Sulfonate/nitrate/taurine transport system permease protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EE90_9SPHN
Sulfonate/nitrate/taurine transport system permease protein {ECO:0000313|EMBL:EHJ60313.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
sulfonate/nitrate/taurine transport system permease; K15577 nitrate/nitrite transport system permease protein
scnpilot_p_inoc_scaffold_847_curated_7
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9291..10721)
DNA (1431bp) protein (477aa)
Histidine kinase n=2 Tax=Novosphingobium RepID=F6IKA4_9SPHN
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHK93224.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
histidine kinase; K15576 nitrate/nitrite transport system substrate-binding protein
scnpilot_p_inoc_scaffold_847_curated_8
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10941..12149)
DNA (1209bp) protein (403aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Novosphingobium sp. AP12 RepID=J3AHH5_9SPHN
nitrate transporter component, nrtA; K02049 NitT/TauT family transport system ATP-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_847_curated_9
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12169..12744)
DNA (576bp) protein (192aa)
chemotaxis protein CheY n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B314
response regulator receiver/ANTAR domain-containing protein; K07183 response regulator NasT
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_847_curated_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12833..13969)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003800C19
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:KEZ21433.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
scnpilot_p_inoc_scaffold_847_curated_11
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14392..16848
DNA (2457bp) protein (819aa)
UPI0003CFA072 related cluster n=1 Tax=unknown RepID=UPI0003CFA072
putative signal transduction histidine kinase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_p_inoc_scaffold_847_curated_12
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16838..17485
DNA (648bp) protein (216aa)
UPI0003D04F7C related cluster n=1 Tax=unknown RepID=UPI0003D04F7C
two component LuxR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_p_inoc_scaffold_847_curated_13
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17739..18398
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225ED57
Uncharacterized protein {ECO:0000313|EMBL:ESZ88462.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
scnpilot_p_inoc_scaffold_847_curated_14
unknown

Not on your lists

18411..18872
DNA (462bp) protein (154aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_847_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19036..19656
DNA (621bp) protein (207aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKR6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67468.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_847_curated_16
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19982..22045)
DNA (2064bp) protein (688aa)
alcohol dehydrogenase; K00114 alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002D523DC
Alcohol dehydrogenase large subunit {ECO:0000313|EMBL:CCA92076.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_847_curated_17
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22042..23364)
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003132D03
Uncharacterized protein {ECO:0000313|EMBL:KJK16926.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
major facilitator superfamily protein
scnpilot_p_inoc_scaffold_847_curated_18
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23514..24440)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002F62A46
helix-turn-helix domain-containing protein
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:AFU47167.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_847_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24574..25035
DNA (462bp) protein (154aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM82_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65337.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_847_curated_20
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25143..26624
DNA (1482bp) protein (494aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036A4D8C
NAD-dependent aldehyde dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
scnpilot_p_inoc_scaffold_847_curated_21
unknown

Not on your lists

26636..27064
DNA (429bp) protein (143aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_847_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27064..27513
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003678893
Uncharacterized protein {ECO:0000313|EMBL:AKH41116.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_847_curated_23
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27519..29123
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002E386DB
Uncharacterized protein {ECO:0000313|EMBL:EQB03815.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
choline dehydrogenase
scnpilot_p_inoc_scaffold_847_curated_24
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29146..30144
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00037F74E7
short chain dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
scnpilot_p_inoc_scaffold_847_curated_25
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30167..31327)
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2L105_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EPC01324.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
hypothetical protein
scnpilot_p_inoc_scaffold_847_curated_26
unknown

Not on your lists

comp(31324..32532)
DNA (1209bp) protein (403aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_847_curated_27
Roseibacterium elongatum, Roseibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32552..34186)
DNA (1635bp) protein (545aa)
hypothetical protein n=1 Tax=Halomonas lutea RepID=UPI00037B3CFF
Alginate biosynthesis protein Alg8 {ECO:0000313|EMBL:AHM03574.1}; TaxID=1294273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibacterium.;" source="Roseibacterium elongatum DSM 19469.;"
hypothetical protein
scnpilot_p_inoc_scaffold_847_curated_28
unknown

Not on your lists

comp(34211..34906)
DNA (696bp) protein (232aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_847_curated_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35038..35889)
DNA (852bp) protein (284aa)
SDR-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INZ9_9SPHN
SDR-family protein
SDR-family protein {ECO:0000313|EMBL:BAK65638.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_847_curated_30
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36110..36307)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EG55_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ59744.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein
Displaying items 1-30 of 33 in total

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