ggKbase home page

scnpilot_p_inoc_scaffold_1621_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1621_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..225)
DNA (225bp) protein (75aa)
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase {ECO:0000313|EMBL:BAK67551.1}; EC=1.14.11.- {ECO:0000313|EMBL:BAK67551.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ9_9SPHN
tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase
scnpilot_p_inoc_scaffold_1621_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

568..3573
DNA (3006bp) protein (1002aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ8_9SPHN
TonB-dependent receptor-like protein; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK67550.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1621_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3662..5110
DNA (1449bp) protein (483aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ7_9SPHN
L-galactonate transporter {ECO:0000313|EMBL:AKH41386.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
major facilitator superfamily protein
scnpilot_p_inoc_scaffold_1621_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5233..6039
DNA (807bp) protein (269aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67547.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1621_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6084..6392)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67546.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1621_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6474..7673
DNA (1200bp) protein (400aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67545.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1621_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7673..8551
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67544.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1621_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8618..10024
DNA (1407bp) protein (469aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ1_9SPHN
Hexuronate transporter {ECO:0000313|EMBL:AKH41391.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
major facilitator superfamily protein
scnpilot_p_inoc_scaffold_1621_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10191..11612)
DNA (1422bp) protein (474aa)
Putative GntR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ0_9SPHN
GntR family transcriptional regulator
Putative GntR family transcriptional regulator {ECO:0000313|EMBL:BAK67542.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1621_curated_10
unknown

Not on your lists

comp(11609..11749)
DNA (141bp) protein (47aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1621_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11878..12879)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Acidovorax avenae RepID=UPI0003040436
SnoaL-like domain protein {ECO:0000313|EMBL:AKH41385.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1621_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13113..14129
DNA (1017bp) protein (339aa)
Putative xylanase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN41_9SPHN
putative xylanase
Putative xylanase {ECO:0000313|EMBL:BAK65489.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1621_curated_13
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14116..15192
DNA (1077bp) protein (359aa)
alpha/beta hydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7AB84
Uncharacterized protein {ECO:0000313|EMBL:KCZ59692.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
esterase/lipase
scnpilot_p_inoc_scaffold_1621_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15440..17677
DNA (2238bp) protein (746aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F7590E
Pesticin receptor {ECO:0000313|EMBL:AKH41396.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor
scnpilot_p_inoc_scaffold_1621_curated_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17682..19412
DNA (1731bp) protein (577aa)
feruloyl esterase (EC:3.1.1.73)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PKQ3_9CAUL
Tannase and feruloyl esterase {ECO:0000313|EMBL:AKH41397.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_1621_curated_16
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19682..20965
DNA (1284bp) protein (428aa)
Putative sugar transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN46_9SPHN
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EZP54214.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
putative sugar transporter
scnpilot_p_inoc_scaffold_1621_curated_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21056..22063
DNA (1008bp) protein (336aa)
LacI family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN45_9SPHN
LacI family transcriptional regulator {ECO:0000313|EMBL:AJP72502.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LacI family transcriptional regulator
scnpilot_p_inoc_scaffold_1621_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22272..23408
DNA (1137bp) protein (379aa)
glycoside hydrolase 68 family protein; K00692 levansucrase [EC:2.4.1.10]
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0CZ62_CAUCE
Levansucrase {ECO:0000313|EMBL:AJP74497.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
scnpilot_p_inoc_scaffold_1621_curated_19
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23411..24310
DNA (900bp) protein (300aa)
ROK family protein; K00847 fructokinase [EC:2.7.1.4]
ROK family protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SW98_CAUSK
ROK family protein {ECO:0000313|EMBL:ABZ70095.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
scnpilot_p_inoc_scaffold_1621_curated_20
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24337..25347)
DNA (1011bp) protein (337aa)
endoglucanase (EC:3.2.1.4)
Endoglucanase Y n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZNS3_9SPHN
Endoglucanase Y {ECO:0000313|EMBL:EJL20981.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
scnpilot_p_inoc_scaffold_1621_curated_21
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25337..25804)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IC86_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA89911.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_1621_curated_22
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25801..29229)
DNA (3429bp) protein (1143aa)
cellulose synthase protein C precursor (EC:2.4.1.12)
Putative enzyme of heme biosynthesis n=1 Tax=Novosphingobium sp. AP12 RepID=J2GEU5_9SPHN
Putative enzyme of heme biosynthesis {ECO:0000313|EMBL:EJL20983.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
scnpilot_p_inoc_scaffold_1621_curated_23
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29226..33614)
DNA (4389bp) protein (1463aa)
glycosyltransferase; K00694 cellulose synthase (UDP-forming) [EC:2.4.1.12]
Cellulose synthase catalytic subunit (UDP-forming) n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZQA7_9SPHN
Scaffold4, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32643.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
scnpilot_p_inoc_scaffold_1621_curated_24
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33611..34387)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J2N3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB18370.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
putative ATPase
scnpilot_p_inoc_scaffold_1621_curated_25
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34387..34779)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IC83_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA89908.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_1621_curated_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35126..35911)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C1Q9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44326.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1621_curated_27
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35917..36294)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IE30_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44327.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1621_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36314..36463)
DNA (150bp) protein (50aa)
Uncharacterized protein {ECO:0000313|EMBL:AKH44328.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Displaying 28 items

View Taxonomy