ggKbase home page

scnpilot_p_inoc_scaffold_816_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_816_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1629)
DNA (1629bp) protein (543aa)
Chaperone protein ClpB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVN2_9SPHN
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ATP-dependent Clp protease ATP-binding subunit ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
scnpilot_p_inoc_scaffold_816_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2034..4916
DNA (2883bp) protein (961aa)
Putative Zn-dependent peptidase n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZPU8_9SPHN
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:AKH42458.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
peptidase M16 domain-containing protein
scnpilot_p_inoc_scaffold_816_curated_3
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4951..5256
DNA (306bp) protein (102aa)
signal peptide protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E30A
Signal peptide protein {ECO:0000313|EMBL:KEO93347.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_816_curated_4
unknown

Not on your lists

comp(5320..6225)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631D80
scnpilot_p_inoc_scaffold_816_curated_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6222..6827)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631D81
Uncharacterized protein {ECO:0000313|EMBL:AHE52751.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
scnpilot_p_inoc_scaffold_816_curated_6
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7009..7467)
DNA (459bp) protein (153aa)
RNA methylase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
RNA methyltransferase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002F324CB
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
scnpilot_p_inoc_scaffold_816_curated_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7490..8995)
DNA (1506bp) protein (502aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000255|HAMAP-Rule:MF_00121}; Short=Asp/Glu-ADT subunit B {ECO:0000255|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000255|HAMAP-Rule:MF_00121};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=GATB_NOVAD rbh
scnpilot_p_inoc_scaffold_816_curated_8
Candidatus Aquiluna sp. IMCC13023, Candidatus Aquiluna, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9054..9707)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Candidatus Aquiluna sp. IMCC13023 RepID=I0R1Y3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC91869.1}; TaxID=1081644 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Luna cluster; Luna-1 subcluster; Candidatus Aquiluna.;" source="Candidatus Aquiluna sp. IMCC13023.;"
methyltransferase FkbM
scnpilot_p_inoc_scaffold_816_curated_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9906..11390)
DNA (1485bp) protein (495aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A (EC:6.3.5.6 6.3.5.7); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVM9_9SPHN
scnpilot_p_inoc_scaffold_816_curated_10
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11390..11692)
DNA (303bp) protein (101aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C (EC:6.3.5.6 6.3.5.7); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E8J6_9SPHN
scnpilot_p_inoc_scaffold_816_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11751..13508)
DNA (1758bp) protein (586aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD115B
Uncharacterized protein {ECO:0000313|EMBL:AKH42465.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_816_curated_12
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13524..14084)
DNA (561bp) protein (187aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4F3_NOVAD
FKBP-type peptidylprolyl isomerase
scnpilot_p_inoc_scaffold_816_curated_13
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14173..14379)
DNA (207bp) protein (69aa)
30S ribosomal protein S21 n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HAY1_9SPHN
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
scnpilot_p_inoc_scaffold_816_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14592..14999
DNA (408bp) protein (136aa)
Putative fluoride ion transporter CrcB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLB0_9SPHN
Putative fluoride ion transporter CrcB {ECO:0000313|EMBL:AKH42468.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
camphor resistance protein CrcB; K06199 CrcB protein
scnpilot_p_inoc_scaffold_816_curated_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14996..16228
DNA (1233bp) protein (411aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
Pseudouridine synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVM4_9SPHN
scnpilot_p_inoc_scaffold_816_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16225..16878
DNA (654bp) protein (218aa)
Pyrophosphatase PpaX {ECO:0000313|EMBL:AKH42470.1}; EC=3.6.1.1 {ECO:0000313|EMBL:AKH42470.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Putative phosphoglycolate phosphatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLW6_9SPHN
scnpilot_p_inoc_scaffold_816_curated_17
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16875..17081
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E8K1_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ62075.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
scnpilot_p_inoc_scaffold_816_curated_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17078..17776
DNA (699bp) protein (233aa)
ATP12 ATPase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C559_9SPHN
ATP12 chaperone protein {ECO:0000313|EMBL:AKH42472.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ATP12 ATPase
scnpilot_p_inoc_scaffold_816_curated_19
Polaribacter sp. Hel1_85, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17916..19523
DNA (1608bp) protein (536aa)
Sulfatase, S1-29 family {ECO:0000313|EMBL:KGL63172.1}; EC=3.1.6.1 {ECO:0000313|EMBL:KGL63172.1};; TaxID=1250005 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. Hel1_85.;"
hypothetical protein n=1 Tax=Hirschia maritima RepID=UPI00035D11CE
arylsulfatase A family protein
scnpilot_p_inoc_scaffold_816_curated_20

Not on your lists

comp(19675..20973)
DNA (1299bp) protein (433aa)
Periplasmic sensor diguanylate cyclase n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DAY4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKN79082.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Diguanylate cyclase precursor
scnpilot_p_inoc_scaffold_816_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21099..21704)
DNA (606bp) protein (202aa)
Putative ABC transporter auxiliary protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3T4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH42473.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_816_curated_22
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21716..22663)
DNA (948bp) protein (316aa)
Putative ABC transporter periplasmic protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLW4_9SPHN
Putative ABC transporter periplasmic protein {ECO:0000313|EMBL:GAD49407.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
putative ABC transport system substrate-binding protein; K02067 putative ABC transport system substrate-binding protein
scnpilot_p_inoc_scaffold_816_curated_23
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22671..23546)
DNA (876bp) protein (292aa)
iron ABC transporter ATP-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B40C02
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD49406.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ABC transporter-like protein; K02065 putative ABC transport system ATP-binding protein
scnpilot_p_inoc_scaffold_816_curated_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23543..24655)
DNA (1113bp) protein (371aa)
Putative ABC transporter permease protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLA3_9SPHN
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAD49405.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K02066 putative ABC transport system permease protein
scnpilot_p_inoc_scaffold_816_curated_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24776..27460
DNA (2685bp) protein (895aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVL5_9SPHN
scnpilot_p_inoc_scaffold_816_curated_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27608..28342
DNA (735bp) protein (245aa)
7-carboxy-7-deazaguanine synthase {ECO:0000313|EMBL:AKH42478.1}; EC=4.3.99.3 {ECO:0000313|EMBL:AKH42478.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3S9_9SPHN
radical SAM protein
scnpilot_p_inoc_scaffold_816_curated_27
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28339..29850
DNA (1512bp) protein (504aa)
MATE efflux family protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4Z8_NOVAD
Multidrug export protein MepA {ECO:0000313|EMBL:AKH42479.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
MATE efflux family protein
scnpilot_p_inoc_scaffold_816_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29890..31599)
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y866_9SPHN
AAA-like domain protein {ECO:0000313|EMBL:AKH42481.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K06915
scnpilot_p_inoc_scaffold_816_curated_29
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31696..32463)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLA1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49400.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_816_curated_30
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32460..33374)
DNA (915bp) protein (305aa)
permease n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6260E
Putative permease {ECO:0000313|EMBL:KHS46892.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein; K07090
Displaying items 1-30 of 37 in total

View Taxonomy