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scnpilot_p_inoc_scaffold_1171_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1171_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1364
DNA (1362bp) protein (454aa)
pepN; aminopeptidase N; K01256 aminopeptidase N [EC:3.4.11.2]
Aminopeptidase N n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUF7_9SPHN
Aminopeptidase N {ECO:0000313|EMBL:GAD49014.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1171_curated_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1375..2130
DNA (756bp) protein (252aa)
polyphenol oxidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00038254B1
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1171_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2341..2916
DNA (576bp) protein (192aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ubiquinol-cytochrome c reductase, iron-sulfur subunit (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y749_9SPHN
scnpilot_p_inoc_scaffold_1171_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2934..4214
DNA (1281bp) protein (427aa)
Cytochrome b n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAJ9_NOVAD
cytochrome b/b6-like; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_1171_curated_5
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4242..5084
DNA (843bp) protein (281aa)
ubiquinol-cytochrome c reductase cytochrome c1 subunit (EC:1.10.2.2); K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit
Ubiquinol-cytochrome c reductase cytochrome c1 subunit {ECO:0000313|EMBL:CCA91109.1}; EC=1.10.2.2 {ECO:0000313|EMBL:CCA91109.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Ubiquinol-cytochrome c reductase cytochrome c1 subunit n=2 Tax=Novosphingobium RepID=F6IFN4_9SPHN
scnpilot_p_inoc_scaffold_1171_curated_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5175..5711
DNA (537bp) protein (179aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=APT_NOVAD
scnpilot_p_inoc_scaffold_1171_curated_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6065..7444
DNA (1380bp) protein (460aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDU2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD57221.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
O-antigen polymerase
scnpilot_p_inoc_scaffold_1171_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7410..7691)
DNA (282bp) protein (94aa)
hypothetical protein id=12557708 bin=CNBR_ACIDO species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65658.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1171_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7705..8082)
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INY5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65624.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1171_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8079..8939)
DNA (861bp) protein (287aa)
Pantothenate synthetase {ECO:0000313|EMBL:AKH43433.1}; EC=6.3.2.1 {ECO:0000313|EMBL:AKH43433.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
panC; pantoate--beta-alanine ligase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
Pantothenate synthetase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL01_9SPHN
scnpilot_p_inoc_scaffold_1171_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9046..9819)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y752_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49021.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1171_curated_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10031..10960
DNA (930bp) protein (310aa)
Chromosome partitioning protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EC35_9SPHN
chromosome partitioning protein; K03496 chromosome partitioning protein
Chromosome partitioning protein {ECO:0000313|EMBL:CCA94318.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_1171_curated_13
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10965..11252
DNA (288bp) protein (96aa)
molecular chaperone DnaJ n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E45F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC64834.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_1171_curated_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11261..12664
DNA (1404bp) protein (468aa)
phosphoglucomutase; K01840 phosphomannomutase [EC:5.4.2.8]
Putative phosphoglucomutase/phosphomannomutase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKE7_9SPHN
Putative phosphoglucomutase/phosphomannomutase {ECO:0000313|EMBL:GAD49025.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1171_curated_15
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12771..14480
DNA (1710bp) protein (570aa)
Chaperone heat shock Hsp70 protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HT19_9SPHN
Chaperone heat shock Hsp70 protein {ECO:0000313|EMBL:EQB19516.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
molecular chaperone DnaK; K04045 molecular chaperone HscC
scnpilot_p_inoc_scaffold_1171_curated_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14477..16084
DNA (1608bp) protein (536aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002D300EC
Uncharacterized protein {ECO:0000313|EMBL:KHS46864.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1171_curated_17
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16081..17346)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y756_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49026.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1171_curated_18
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17611..20106
DNA (2496bp) protein (832aa)
ATP-dependent RNA helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
ATP-dependent RNA helicase, DEAD/DEAH box family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N654_ERYLH
ATP-dependent RNA helicase, DEAD/DEAH box family protein {ECO:0000313|EMBL:ABC64837.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_1171_curated_19
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20103..20540)
DNA (438bp) protein (146aa)
biopolymer transportern ExbD n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002EECC39
Biopolymer transport protein {ECO:0000313|EMBL:EJL21806.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
biopolymer transport exbD transmembrane protein; K03559 biopolymer transport protein ExbD
scnpilot_p_inoc_scaffold_1171_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20776..21237)
DNA (462bp) protein (154aa)
Biopolymer transport protein ExbD n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUH3_9SPHN
Biopolymer transport protein ExbD {ECO:0000313|EMBL:AKH43440.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
biopolymer transport exbD transmembrane protein; K03559 biopolymer transport protein ExbD
scnpilot_p_inoc_scaffold_1171_curated_21
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21262..21798)
DNA (537bp) protein (179aa)
Biopolymer transport protein ExbD n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKF1_9SPHN
Biopolymer transport protein ExbD {ECO:0000313|EMBL:GAD49030.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
biopolymer transport ExbD protein; K03559 biopolymer transport protein ExbD
scnpilot_p_inoc_scaffold_1171_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21890..22657)
DNA (768bp) protein (256aa)
Outer membrane transport energization protein ExbB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCE5_NOVAD
Biopolymer transport protein ExbB {ECO:0000313|EMBL:AKH43442.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
scnpilot_p_inoc_scaffold_1171_curated_23
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22742..23404)
DNA (663bp) protein (221aa)
TonB-like protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W029_9SPHN
TonB-like protein {ECO:0000313|EMBL:EJU13056.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
TonB-like protein; K03832 periplasmic protein TonB
scnpilot_p_inoc_scaffold_1171_curated_24
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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23735..24625
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PES7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EDL47686.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1171_curated_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24746..25711
DNA (966bp) protein (322aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3]
Homoserine dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUH8_9SPHN
Displaying 25 items

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