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scnpilot_p_inoc_scaffold_562_curated

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Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_562_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..431)
DNA (429bp) protein (143aa)
TetR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1G7_9SPHN
TetR family transcriptional regulator {ECO:0000313|EMBL:ENY81312.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TetR family transcriptional regulator
scnpilot_p_inoc_scaffold_562_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

545..2791
DNA (2247bp) protein (749aa)
Quinohemoprotein alcohol dehydrogenase ADH IIB {ECO:0000313|EMBL:AKH43915.1}; EC=1.1.9.1 {ECO:0000313|EMBL:AKH43915.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002E696CC
pyrrolo-quinoline quinone
scnpilot_p_inoc_scaffold_562_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3098..4567
DNA (1470bp) protein (490aa)
Geranial dehydrogenase {ECO:0000313|EMBL:AKH43916.1}; EC=1.2.1.86 {ECO:0000313|EMBL:AKH43916.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Aldehyde dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4I6_NOVAD
aldehyde dehydrogenase
scnpilot_p_inoc_scaffold_562_curated_4
Hyphomonas atlantica, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4644..5066
DNA (423bp) protein (141aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1280948 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas atlantica.;"
scnpilot_p_inoc_scaffold_562_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5120..5665)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3374F
SnoaL-like domain protein {ECO:0000313|EMBL:AKH43922.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_562_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5774..7801
DNA (2028bp) protein (676aa)
TonB-dependent receptor, putative n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGH7_9SPHN
Vitamin B12/cobalamin outer membrane transporter {ECO:0000313|EMBL:AKH43923.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor
scnpilot_p_inoc_scaffold_562_curated_7
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7975..9228)
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Rhodococcus sp. 29MFTsu3.1 RepID=UPI00036C4F1C
para-nitrophenol 4-monooxygenase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
scnpilot_p_inoc_scaffold_562_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9246..10919)
DNA (1674bp) protein (558aa)
Acetolactate synthase large subunit {ECO:0000313|EMBL:AKH43672.1}; EC=2.2.1.6 {ECO:0000313|EMBL:AKH43672.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Thiamine pyrophosphate enzyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN9_9SPHN
thiamine pyrophosphate enzyme
scnpilot_p_inoc_scaffold_562_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11006..11554)
DNA (549bp) protein (183aa)
MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN84_9SPHN
Transcriptional regulator SlyA {ECO:0000313|EMBL:AKH44207.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
MarR family transcriptional regulator; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
scnpilot_p_inoc_scaffold_562_curated_10
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11796..12080)
DNA (285bp) protein (95aa)
Putative endonuclease containing a URI domain n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZQR0_9SPHN
Putative endonuclease containing a URI domain {ECO:0000313|EMBL:EJL21144.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
scnpilot_p_inoc_scaffold_562_curated_11
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12223..13851)
DNA (1629bp) protein (543aa)
Choline dehydrogenase {ECO:0000313|EMBL:CCW18825.1}; EC=1.1.99.1 {ECO:0000313|EMBL:CCW18825.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
Choline dehydrogenase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MNM1_9SPHN
glucose-methanol-choline oxidoreductase
scnpilot_p_inoc_scaffold_562_curated_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13944..15161)
DNA (1218bp) protein (406aa)
Esterase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L7V0_9SPHN
Esterase {ECO:0000313|EMBL:AJP74243.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
esterase; K07214 enterochelin esterase and related enzymes
scnpilot_p_inoc_scaffold_562_curated_13
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15290..17524
DNA (2235bp) protein (745aa)
beta-glucosidase (EC:3.2.1.21); K05349 beta-glucosidase [EC:3.2.1.21]
beta-glucosidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B36370
Beta-glucosidase {ECO:0000313|EMBL:KHK89847.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
scnpilot_p_inoc_scaffold_562_curated_14
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17788..18057)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IXB4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16535.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
scnpilot_p_inoc_scaffold_562_curated_15
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18133..19464
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J3I7_9SPHN
Major facilitator transporter {ECO:0000313|EMBL:KEO86032.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
putative nickel resistance protein
scnpilot_p_inoc_scaffold_562_curated_16
unknown

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19461..19856
DNA (396bp) protein (132aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_562_curated_17
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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19915..21174
DNA (1260bp) protein (420aa)
Outer membrane efflux family protein n=1 Tax=Exiguobacterium sp. S17 RepID=S3FY60_9BACL
Heavy metal resistance protein CzcC {ECO:0000313|EMBL:GAM01532.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
metal ion efflux outer membrane factor protein family protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
scnpilot_p_inoc_scaffold_562_curated_18
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21171..22316
DNA (1146bp) protein (382aa)
Metal transporter n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJK5_9SPHN
Metal transporter {ECO:0000313|EMBL:EQB16531.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
secretion protein HlyD
scnpilot_p_inoc_scaffold_562_curated_19
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22313..25570
DNA (3258bp) protein (1086aa)
Cation transporter n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IXA9_9SPHN
Cation transporter {ECO:0000313|EMBL:EQB16530.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
heavy metal efflux pump CzcA; K07239 heavy-metal exporter, HME family
scnpilot_p_inoc_scaffold_562_curated_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25661..26125
DNA (465bp) protein (155aa)
Putative lipoprotein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZ12_9SPHN
DNA, contig: SP661 {ECO:0000313|EMBL:GAN15569.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
scnpilot_p_inoc_scaffold_562_curated_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26125..26814
DNA (690bp) protein (230aa)
Putative membrane protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZ11_9SPHN
DNA, contig: SP661 {ECO:0000313|EMBL:GAN15568.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
scnpilot_p_inoc_scaffold_562_curated_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26811..27434
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZ10_9SPHN
DNA, contig: SP661 {ECO:0000313|EMBL:GAN15567.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
scnpilot_p_inoc_scaffold_562_curated_23
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27450..28163)
DNA (714bp) protein (238aa)
manganese and iron superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
UPI0003CFDC39 related cluster n=1 Tax=unknown RepID=UPI0003CFDC39
Superoxide dismutase {ECO:0000313|EMBL:KEO86033.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
scnpilot_p_inoc_scaffold_562_curated_24
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28219..29586)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0IHV1_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_p_inoc_scaffold_562_curated_25
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29586..30413)
DNA (828bp) protein (276aa)
Sulfurtransferase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J3J2_9SPHN
Sulfurtransferase {ECO:0000313|EMBL:EQB16539.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
chromate resistance exported protein
scnpilot_p_inoc_scaffold_562_curated_26
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30663..31238)
DNA (576bp) protein (192aa)
Resolvase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H5I2_9SPHN
Resolvase domain-containing protein {ECO:0000313|EMBL:KHS45837.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
resolvase domain-containing protein
scnpilot_p_inoc_scaffold_562_curated_27
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31694..33187)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4YXW1_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI95193.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
scnpilot_p_inoc_scaffold_562_curated_28
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33524..34966)
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFL5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHK71403.1}; TaxID=1288313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans DSM 3504.;"
hypothetical protein
scnpilot_p_inoc_scaffold_562_curated_29
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34926..37493)
DNA (2568bp) protein (856aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SIS3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHK71402.1}; TaxID=1288313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans DSM 3504.;"
hypothetical protein
scnpilot_p_inoc_scaffold_562_curated_30
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37973..38878)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B33A5C
Uncharacterized protein {ECO:0000313|EMBL:KCZ51243.1}; TaxID=1280941 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. T16B2.;"
hypothetical protein
Displaying items 1-30 of 55 in total

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