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scnpilot_p_inoc_scaffold_680_curated

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_680_curated_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..606)
DNA (606bp) protein (202aa)
Urea carboxylase-related aminomethyltransferase {ECO:0000313|EMBL:GAO53446.1}; EC=2.1.2.10 {ECO:0000313|EMBL:GAO53446.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Urea carboxylase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IDZ4_9SPHN
hypothetical protein; K09967 hypothetical protein
scnpilot_p_inoc_scaffold_680_curated_2
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(603..1103)
DNA (501bp) protein (167aa)
Putative nickel-responsive regulator n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQ07_9SPHN
Putative nickel-responsive regulator {ECO:0000256|HAMAP-Rule:MF_00476}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
CopG family transcriptional regulator; K07722 CopG family transcriptional regulator, nickel-responsive regulator
scnpilot_p_inoc_scaffold_680_curated_3
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1116..1904)
DNA (789bp) protein (263aa)
Lauroyl acyltransferase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IYV3_9SPHN
Lauroyl acyltransferase {ECO:0000313|EMBL:KFG89226.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
ABC-type transport system ATPase component; K02049 NitT/TauT family transport system ATP-binding protein
scnpilot_p_inoc_scaffold_680_curated_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1901..2716)
DNA (816bp) protein (272aa)
Lipid kinase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GXE4_9SPHN
Urea carboxylase-related ABC transporter, permease protein {ECO:0000313|EMBL:GAO53443.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sulfonate/nitrate/taurine transport system permease; K02050 NitT/TauT family transport system permease protein
scnpilot_p_inoc_scaffold_680_curated_5
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2747..3832)
DNA (1086bp) protein (362aa)
ABC-type transport system periplasmic component n=1 Tax=Sphingomonas sp. LH128 RepID=J8VRL2_9SPHN
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32278.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
sulfonate/nitrate/taurine transport system substrate-binding protein
scnpilot_p_inoc_scaffold_680_curated_6
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4042..5130
DNA (1089bp) protein (363aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Novosphingobium sp. AP12 RepID=J2HH33_9SPHN
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EJL34963.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
scnpilot_p_inoc_scaffold_680_curated_7
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5157..6167
DNA (1011bp) protein (337aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q458_9SPHN
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EJL34962.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
scnpilot_p_inoc_scaffold_680_curated_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6191..7117
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VJ74_9SPHN
Collagen triple helix repeat domain protein {ECO:0000313|EMBL:GAO53450.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_680_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7444..8409
DNA (966bp) protein (322aa)
Sterol desaturase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L300_9SPHN
Sterol desaturase-like {ECO:0000313|EMBL:GAO53451.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sterol desaturase-like
scnpilot_p_inoc_scaffold_680_curated_10
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8601..11030
DNA (2430bp) protein (810aa)
Outer membrane receptor protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GWW0_9SPHN
Outer membrane receptor protein {ECO:0000313|EMBL:EJL34960.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TonB-dependent receptor
scnpilot_p_inoc_scaffold_680_curated_11
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11113..12693)
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WEL0_9SPHN
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32283.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
scnpilot_p_inoc_scaffold_680_curated_12
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12812..13144)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q474_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL34977.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
scnpilot_p_inoc_scaffold_680_curated_13
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13271..13681)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AP25_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL34976.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
scnpilot_p_inoc_scaffold_680_curated_14
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13803..14753)
DNA (951bp) protein (317aa)
UPI0003D5E236 related cluster n=1 Tax=unknown RepID=UPI0003D5E236
Aspartyl beta-hydroxylase {ECO:0000313|EMBL:ETI65694.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
aspartyl/asparaginyl beta-hydroxylase
scnpilot_p_inoc_scaffold_680_curated_15
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14758..16677)
DNA (1920bp) protein (640aa)
Sulfotransferase family protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H5D8_9CAUL
Sulfotransferase family protein {ECO:0000313|EMBL:EJL38035.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
sulfotransferase
scnpilot_p_inoc_scaffold_680_curated_16
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16674..17285)
DNA (612bp) protein (204aa)
Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase n=1 Tax=Caulobacter sp. AP07 RepID=J3AV76_9CAUL
Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase {ECO:0000313|EMBL:EJL38034.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
aspartyl/asparaginyl beta-hydroxylase
scnpilot_p_inoc_scaffold_680_curated_17
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17282..17920)
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VMC5_CAUST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG11648.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
scnpilot_p_inoc_scaffold_680_curated_18
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17994..20750)
DNA (2757bp) protein (919aa)
TonB-dependent receptor n=1 Tax=Caulobacter sp. AP07 RepID=J2QD43_9CAUL
TonB-dependent receptor {ECO:0000313|EMBL:EJL38032.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
TonB-dependent receptor
scnpilot_p_inoc_scaffold_680_curated_19
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20901..22091)
DNA (1191bp) protein (397aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WD85_9CAUL
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
scnpilot_p_inoc_scaffold_680_curated_20
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22224..24341
DNA (2118bp) protein (706aa)
phosphocholine-specific phospholipase c (EC:3.1.4.3); K01114 phospholipase C [EC:3.1.4.3]
UPI0003D64A85 related cluster n=1 Tax=unknown RepID=UPI0003D64A85
Phospholipase {ECO:0000313|EMBL:ETI65699.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
scnpilot_p_inoc_scaffold_680_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24527..25630
DNA (1104bp) protein (368aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMD6_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK65391.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_680_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25673..26140)
DNA (468bp) protein (156aa)
MarR family transcriptional regulator n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z5S2_9PROT
Transcriptional regulator SlyA {ECO:0000313|EMBL:AKH43100.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
MarR family transcriptional regulator
scnpilot_p_inoc_scaffold_680_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26320..28710
DNA (2391bp) protein (797aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN22_9SPHN
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK65470.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
TonB-dependent receptor-like protein
scnpilot_p_inoc_scaffold_680_curated_24
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28788..29093)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM41_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW17794.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
antibiotic biosynthesis monooxygenase
scnpilot_p_inoc_scaffold_680_curated_25
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29272..30438
DNA (1167bp) protein (389aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH2_9SPHN
putative hydrolase
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_680_curated_26
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30463..31296
DNA (834bp) protein (278aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pseudomonas putida TRO1 RepID=N9VTW3_PSEPU
short chain dehydrogenase/reductase oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_680_curated_27
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31314..31730)
DNA (417bp) protein (139aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH4_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_680_curated_28
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31929..34418
DNA (2490bp) protein (830aa)
TonB-dependent receptor n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QIM4_BRESC
TonB-dependent receptor
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_680_curated_29
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34863..36023)
DNA (1161bp) protein (387aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITH2_9SPHN
putative hydrolase
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_680_curated_30
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36244..39024
DNA (2781bp) protein (927aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039E24CA
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
Displaying items 1-30 of 43 in total

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