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scnpilot_p_inoc_scaffold_1555_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1555_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..588
DNA (588bp) protein (196aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:AKH43314.1}; EC=2.1.1.77 {ECO:0000313|EMBL:AKH43314.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VUK7_9SPHN
scnpilot_p_inoc_scaffold_1555_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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591..2030
DNA (1440bp) protein (480aa)
TolC-like protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZU73_9SPHN
TolC-like protein {ECO:0000313|EMBL:GAD48914.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Type I secretion outer membrane protein, TolC; K12340 outer membrane channel protein
scnpilot_p_inoc_scaffold_1555_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2051..2491
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YK62_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48915.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K09991 hypothetical protein
scnpilot_p_inoc_scaffold_1555_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2504..2872
DNA (369bp) protein (123aa)
Ferredoxin, 2Fe-2S, putative n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBF6_9SPHN
Ferredoxin, 2Fe-2S {ECO:0000313|EMBL:AKH43317.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ferredoxin, 2Fe-2S
scnpilot_p_inoc_scaffold_1555_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2869..3168)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2E0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43318.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1555_curated_6
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3351..3779
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WDX9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ78383.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1555_curated_7
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3811..4140
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFY0_9SPHN
Heme biosynthesis protein HemY {ECO:0000313|EMBL:KEO85809.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
HesB/YadR/YfhF
scnpilot_p_inoc_scaffold_1555_curated_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4146..4919
DNA (774bp) protein (258aa)
exodeoxyribonuclease III (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III {ECO:0000313|EMBL:KHS47781.1}; EC=3.1.11.2 {ECO:0000313|EMBL:KHS47781.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
Exodeoxyribonuclease III n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC18_NOVAD
scnpilot_p_inoc_scaffold_1555_curated_9
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4993..5724)
DNA (732bp) protein (244aa)
Putative hydrolase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKT6_9SPHN
Hydrolase {ECO:0000313|EMBL:KEO85811.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1555_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5866..6207)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SKU3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43323.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1555_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6229..6690)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZU80_9SPHN
Thioesterase superfamily protein {ECO:0000313|EMBL:AKH43324.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1555_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6701..7162)
DNA (462bp) protein (154aa)
nitrogen regulatory IIA; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
Putative phosphotransferase system enzyme IIA component n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YK68_9SPHN
Putative phosphotransferase system enzyme IIA component {ECO:0000313|EMBL:GAD48925.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1555_curated_13
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7308..7877)
DNA (570bp) protein (190aa)
Ribosome-associated protein Y n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N6K4_ERYLH
ribosome-associated protein Y
Ribosome-associated protein Y {ECO:0000313|EMBL:ABC64687.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_1555_curated_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7919..8605)
DNA (687bp) protein (229aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III subunit epsilon n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKU0_9SPHN
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:GAD48927.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1555_curated_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8648..9244)
DNA (597bp) protein (199aa)
Dephospho-CoA kinase {ECO:0000313|EMBL:AKH43328.1}; EC=2.7.1.24 {ECO:0000313|EMBL:AKH43328.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
coaE; dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2E9_9SPHN
scnpilot_p_inoc_scaffold_1555_curated_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9241..10110)
DNA (870bp) protein (290aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
shikimate dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZU84_9SPHN
scnpilot_p_inoc_scaffold_1555_curated_17
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10107..10652)
DNA (546bp) protein (182aa)
Maf-like protein PMI02_04197 n=1 Tax=Novosphingobium sp. AP12 RepID=J2G1D6_9SPHN
Maf-like protein PMI02_04197 {ECO:0000256|HAMAP-Rule:MF_00528}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
Maf-like protein; K06287 septum formation protein
scnpilot_p_inoc_scaffold_1555_curated_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10702..11541)
DNA (840bp) protein (280aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PDRP_NOVAD rbh
hypothetical protein; K09773 hypothetical protein
scnpilot_p_inoc_scaffold_1555_curated_19
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11893..12918
DNA (1026bp) protein (342aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
uroporphyrinogen decarboxylase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B47474
scnpilot_p_inoc_scaffold_1555_curated_20
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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comp(12924..14867)
DNA (1944bp) protein (648aa)
ADP-ribosylglycohydrolase id=2717649 bin=GWF2_Bacteroidetes_40_13 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
ADP-ribosylglycohydrolase
Tax=BJP_IG2103_Bacteroidetes_41_9
scnpilot_p_inoc_scaffold_1555_curated_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15036..15461
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2F3_9SPHN
Protoporphyrinogen IX oxidase, novel form, hemJ {ECO:0000313|EMBL:GAO54355.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein; K08973 putative membrane protein
scnpilot_p_inoc_scaffold_1555_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15664..16920
DNA (1257bp) protein (419aa)
Transcription termination factor Rho n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZU89_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43334.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rho; transcription termination factor Rho; K03628 transcription termination factor Rho
scnpilot_p_inoc_scaffold_1555_curated_23
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16929..17471
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DE5B
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_1555_curated_24
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17468..18166)
DNA (699bp) protein (233aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Carboxymethylenebutenolidase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC35_NOVAD
Carboxymethylenebutenolidase {ECO:0000313|EMBL:AJA11016.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
scnpilot_p_inoc_scaffold_1555_curated_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18304..18558
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC36_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:AKH43336.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1555_curated_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18603..19064
DNA (462bp) protein (154aa)
tRNA modification GTPase MnmE {ECO:0000313|EMBL:AKH43337.1}; EC=3.6.-.- {ECO:0000313|EMBL:AKH43337.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-]
tRNA modification GTPase MnmE n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0ILF1_9SPHN
Displaying 26 items

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