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scnpilot_p_inoc_scaffold_926_curated

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_926_curated_1
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..585
DNA (585bp) protein (195aa)
CysE/LacA/LpxA/NodL family acetyltransferase; K03818 putative colanic acid biosynthesis acetyltransferase WcaF [EC:2.3.1.-]
CysE/LacA/LpxA/NodL family acetyltransferase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTR3_PSEUP
CysE/LacA/LpxA/NodL family acetyltransferase {ECO:0000313|EMBL:AER56166.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_p_inoc_scaffold_926_curated_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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789..2075
DNA (1287bp) protein (429aa)
putative flippase id=1283694 bin=GWE1_Burkholderiales_65_30 species=Pseudoalteromonas marina genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
polysaccharide biosynthesis protein
Tax=GWE1_Burkholderiales_65_30_curated
scnpilot_p_inoc_scaffold_926_curated_3
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2089..3177
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EK07_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK49954.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_p_inoc_scaffold_926_curated_4
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3217..4578
DNA (1362bp) protein (454aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP80237.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
scnpilot_p_inoc_scaffold_926_curated_5
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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4632..5720
DNA (1089bp) protein (363aa)
Group 1 glycosyl transferase n=1 Tax=Mycobacterium vaccae ATCC 25954 RepID=K0VJQ8_MYCVA
Group 1 glycosyl transferase {ECO:0000313|EMBL:EJZ11334.1}; TaxID=1194972 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
group 1 glycosyl transferase
scnpilot_p_inoc_scaffold_926_curated_6
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5902..6795
DNA (894bp) protein (298aa)
Predicted Rossmann fold nucleotide-binding protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WE77_9SPHN
hypothetical protein; K06966
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_926_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6917..7666)
DNA (750bp) protein (250aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLG6_9SPHN
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase {ECO:0000313|EMBL:GAD49242.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_926_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7731..7958)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C1N3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH42636.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K09984 hypothetical protein
scnpilot_p_inoc_scaffold_926_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7958..9295)
DNA (1338bp) protein (446aa)
Phosphoglucosamine mutase {ECO:0000313|EMBL:AKH42635.1}; EC=5.4.2.10 {ECO:0000313|EMBL:AKH42635.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10]
Phosphoglucosamine mutase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3B2_9SPHN
scnpilot_p_inoc_scaffold_926_curated_10
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9315..9989)
DNA (675bp) protein (225aa)
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_926_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10252..10647
DNA (396bp) protein (132aa)
Proton glutamate symport protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N851_ERYLH
Proton glutamate symport protein {ECO:0000313|EMBL:AKH42634.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
proton glutamate symport protein
scnpilot_p_inoc_scaffold_926_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10724..11329
DNA (606bp) protein (202aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZV38_9SPHN
scnpilot_p_inoc_scaffold_926_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11372..12598)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCW9_9SPHN
Pheromone autoinducer 2 transporter {ECO:0000313|EMBL:AKH42628.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_926_curated_14
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12656..13273)
DNA (618bp) protein (206aa)
RNA polymerase sigma70 n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD04FC
RNA polymerase sigma70 {ECO:0000313|EMBL:KEO92378.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_926_curated_15
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13270..13491)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N854_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC64137.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_926_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13687..15336
DNA (1650bp) protein (550aa)
Blue-light-activated histidine kinase 1 {ECO:0000313|EMBL:AKH42625.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH42625.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
signal transduction histidine kinase (EC:2.7.3.-)
Signal transduction histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB38_NOVAD
scnpilot_p_inoc_scaffold_926_curated_17
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15364..16158)
DNA (795bp) protein (265aa)
Two-component response regulator n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCX3_9SPHN
Two-component response regulator {ECO:0000313|EMBL:KEO92381.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
two-component response regulator
scnpilot_p_inoc_scaffold_926_curated_18
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16442..17605)
DNA (1164bp) protein (388aa)
UPI0003D64393 related cluster n=1 Tax=unknown RepID=UPI0003D64393
Uncharacterized protein {ECO:0000313|EMBL:ETI64057.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
scnpilot_p_inoc_scaffold_926_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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17745..18830
DNA (1086bp) protein (362aa)
Fatty acid desaturase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IK07_9SPHN
Fatty acid desaturase {ECO:0000313|EMBL:AKH42594.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
fatty acid desaturase
scnpilot_p_inoc_scaffold_926_curated_20
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18838..19935)
DNA (1098bp) protein (366aa)
Putative permease n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y7R6_9SPHN
Putative permease {ECO:0000313|EMBL:GAD49251.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
lipopolysaccharide export system permease; K11720 lipopolysaccharide export system permease protein
scnpilot_p_inoc_scaffold_926_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19925..21148)
DNA (1224bp) protein (408aa)
Predicted permease n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WE90_9SPHN
Lipopolysaccharide export system permease protein LptF {ECO:0000313|EMBL:AKH42596.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
lipopolysaccharide export system permease
scnpilot_p_inoc_scaffold_926_curated_22
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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21300..22007
DNA (708bp) protein (236aa)
Similar to nodulin 21 n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MMS1_9SPHN
Membrane protein {ECO:0000313|EMBL:EZQ14955.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_926_curated_23

Not on your lists

comp(22067..22486)
DNA (420bp) protein (140aa)
ATP-dependent Clp protease adaptor protein ClpS n=1 Tax=uncultured bacterium RepID=D6R6T8_9BACT
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K06891 ATP-dependent Clp protease adaptor protein ClpS
scnpilot_p_inoc_scaffold_926_curated_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22680..23495)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCY3_9SPHN
Phasin protein {ECO:0000313|EMBL:AKH42598.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
phasin
scnpilot_p_inoc_scaffold_926_curated_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23664..25571)
DNA (1908bp) protein (636aa)
Poly-beta-hydroxybutyrate polymerase {ECO:0000313|EMBL:AKH42599.1}; EC=2.3.1.- {ECO:0000313|EMBL:AKH42599.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
poly-3-hydroxybutyrate synthase; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Putative poly-beta-hydroxybutyrate polymerase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKZ3_9SPHN
scnpilot_p_inoc_scaffold_926_curated_26
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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25725..26924
DNA (1200bp) protein (400aa)
LL-diaminopimelate aminotransferase (EC:2.6.1.83); K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
Aminotransferase n=1 Tax=Sphingobium baderi LL03 RepID=T0GP00_9SPHN
Aminotransferase {ECO:0000313|EMBL:EQB01733.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
scnpilot_p_inoc_scaffold_926_curated_27
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26986..27798
DNA (813bp) protein (271aa)
enoyl-CoA hydratase (EC:4.2.1.17)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002FE37CA
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_926_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27910..29310
DNA (1401bp) protein (467aa)
Putative aromatic acid transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IK61_9SPHN
4-hydroxybenzoate transporter PcaK {ECO:0000313|EMBL:AKH42601.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative aromatic acid transporter
scnpilot_p_inoc_scaffold_926_curated_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29332..30987
DNA (1656bp) protein (552aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:AKH42602.1}; EC=4.2.1.9 {ECO:0000313|EMBL:AKH42602.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQH0_9SPHN
scnpilot_p_inoc_scaffold_926_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(31005..31364)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMI0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84422.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09117 hypothetical protein
Displaying items 1-30 of 35 in total

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