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scnpilot_p_inoc_scaffold_790_curated

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_790_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..240
DNA (240bp) protein (80aa)
Ribonuclease PH {ECO:0000313|EMBL:AKH41575.1}; EC=2.7.7.56 {ECO:0000313|EMBL:AKH41575.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56]
ribonuclease PH n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B32F06
scnpilot_p_inoc_scaffold_790_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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237..863
DNA (627bp) protein (209aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000313|EMBL:AKH41574.1}; EC=3.6.1.19 {ECO:0000313|EMBL:AKH41574.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
nucleoside-triphosphate diphosphatase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD05AD
scnpilot_p_inoc_scaffold_790_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(876..1349)
DNA (474bp) protein (158aa)
Pathogenesis-related protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y8K5_9SPHN
Pathogenesis-related protein {ECO:0000313|EMBL:GAD49581.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
pathogenesis-related protein
scnpilot_p_inoc_scaffold_790_curated_4
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1438..2589
DNA (1152bp) protein (384aa)
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:CCA93343.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CCA93343.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPJ1_9SPHN
scnpilot_p_inoc_scaffold_790_curated_5
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2586..3485
DNA (900bp) protein (300aa)
Tyrosine recombinase XerC n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJ43_9SPHN
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
integrase/recombinase XerC; K03733 integrase/recombinase XerC
scnpilot_p_inoc_scaffold_790_curated_6
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3580..4221
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2P1K2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL20832.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
twin-arginine translocation pathway signal protein
scnpilot_p_inoc_scaffold_790_curated_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4228..4494)
DNA (267bp) protein (89aa)
cold-shock protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A400
Putative inner membrane protein {ECO:0000313|EMBL:CCW16504.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
nuclease (SNase domain-containing protein)
scnpilot_p_inoc_scaffold_790_curated_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4569..5174)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZW32_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49584.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_790_curated_9
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5323..6072
DNA (750bp) protein (250aa)
fabG2; 3-ketoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-ketoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Pseudomonas sp. VLB120 RepID=U5VER5_9PSED
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AHZ76296.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
scnpilot_p_inoc_scaffold_790_curated_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6087..7043)
DNA (957bp) protein (319aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
glutathione synthetase (EC:6.3.2.3); K01920 glutathione synthase [EC:6.3.2.3]
Glutathione synthetase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLN5_9SPHN
scnpilot_p_inoc_scaffold_790_curated_11
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7082..7432)
DNA (351bp) protein (117aa)
UPF0102 protein ED21_27413 n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P7H1_9SPHN
UPF0102 protein ED21_27413 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
endonuclease; K07460 putative endonuclease
scnpilot_p_inoc_scaffold_790_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7429..8277)
DNA (849bp) protein (283aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YM89_9SPHN
scnpilot_p_inoc_scaffold_790_curated_13
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8314..9465
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAK4_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC63287.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_790_curated_14
unknown

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comp(10147..10671)
DNA (525bp) protein (175aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_790_curated_15
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11017..11529
DNA (513bp) protein (171aa)
DNA topoisomerase IV subunit B; K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
DNA topoisomerase 4 subunit B n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAK5_ERYLH
scnpilot_p_inoc_scaffold_790_curated_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11565..12551)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y8L3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49591.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
integral membrane protein TerC; K05794 tellurite resistance protein TerC
scnpilot_p_inoc_scaffold_790_curated_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12641..12823)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3E0_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27633.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_790_curated_18
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13111..14400
DNA (1290bp) protein (430aa)
Putative beta-lactamase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAK8_ERYLH
beta-lactamase
Putative beta-lactamase {ECO:0000313|EMBL:ABC63283.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_790_curated_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14397..15245
DNA (849bp) protein (283aa)
ATPase AAA_5 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J4_NOVAD
ATPase
ATPase AAA_5 {ECO:0000313|EMBL:ABD26529.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_790_curated_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15277..16023)
DNA (747bp) protein (249aa)
Glutathione S-transferase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J3_NOVAD
glutathione S-transferase-like protein
Glutathione S-transferase-like protein {ECO:0000313|EMBL:ABD26530.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_790_curated_21
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16208..17389
DNA (1182bp) protein (394aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9D9_9SPHN
von Willebrand factor A {ECO:0000313|EMBL:KEO98951.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein; K09989 hypothetical protein
scnpilot_p_inoc_scaffold_790_curated_22
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17759..18961)
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPH9_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA93331.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_790_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18958..19506)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VFV2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41560.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_790_curated_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19611..20843
DNA (1233bp) protein (411aa)
Tyrosine--tRNA ligase {ECO:0000313|EMBL:AKH41559.1}; EC=6.1.1.1 {ECO:0000313|EMBL:AKH41559.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYY_NOVAD rbh
scnpilot_p_inoc_scaffold_790_curated_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20969..21304
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAL7_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AKH41558.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_790_curated_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21408..22685
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003123D49
Enterobactin exporter EntS {ECO:0000313|EMBL:AKH41557.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
major facilitator transporter
scnpilot_p_inoc_scaffold_790_curated_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22682..23599
DNA (918bp) protein (306aa)
Cysteine synthase {ECO:0000313|EMBL:GAO55890.1}; EC=2.5.1.47 {ECO:0000313|EMBL:GAO55890.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cysteine synthase A (EC:2.5.1.47); K01738 cysteine synthase A [EC:2.5.1.47]
cysteine synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B56079
scnpilot_p_inoc_scaffold_790_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23602..24303
DNA (702bp) protein (234aa)
Dienelactone hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6I0_NOVAD
Dienelactone hydrolase family protein {ECO:0000313|EMBL:AKH41555.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dienelactone hydrolase
scnpilot_p_inoc_scaffold_790_curated_29
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24367..24702)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Butyrivibrio fibrisolvens RepID=UPI0003B5032A
Uncharacterized protein {ECO:0000313|EMBL:GAD49602.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_790_curated_30
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24896..26701)
DNA (1806bp) protein (602aa)
acyl-CoA dehydrogenase; K00257 [EC:1.3.99.-]
acyl-CoA dehydrogenase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD105E
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KEO87146.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
Displaying items 1-30 of 45 in total

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