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scnpilot_p_inoc_scaffold_1074_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1074_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..780)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I4N7_9SPHN
Fec operon regulator FecR {ECO:0000313|EMBL:AKH44131.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
anti-FecI sigma factor FecR
scnpilot_p_inoc_scaffold_1074_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(819..1283)
DNA (465bp) protein (155aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6E7_SPHWW
Extracytoplasmic-function sigma-70 factor {ECO:0000313|EMBL:AKH44130.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_1074_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1450..2586)
DNA (1137bp) protein (379aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZBP6_9SPHN
Murein L,D-transpeptidase {ECO:0000313|EMBL:AKH42113.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1074_curated_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2664..3263
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLI6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49262.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
twin-arginine translocation pathway signal
scnpilot_p_inoc_scaffold_1074_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3284..3865)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E43E
Uncharacterized protein {ECO:0000313|EMBL:GAD49928.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1074_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3873..5654)
DNA (1782bp) protein (594aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQM4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44142.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1074_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5673..7808)
DNA (2136bp) protein (712aa)
Quinohemoprotein alcohol dehydrogenase ADH-IIG {ECO:0000313|EMBL:AKH44141.1}; EC=1.1.9.1 {ECO:0000313|EMBL:AKH44141.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Quinohemoprotein alcohol dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQN2_9SPHN
quinohemoprotein alcohol dehydrogenase
scnpilot_p_inoc_scaffold_1074_curated_8
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7805..8833)
DNA (1029bp) protein (343aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IL49_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA92151.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_1074_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8888..11398)
DNA (2511bp) protein (837aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INW2_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK65601.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1074_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11578..12549
DNA (972bp) protein (324aa)
AraC family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ65_9SPHN
AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:BAK67235.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1074_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12691..13683
DNA (993bp) protein (331aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQM5_9SPHN
Virginiamycin B lyase {ECO:0000313|EMBL:AKH44140.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1074_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13683..14405
DNA (723bp) protein (241aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQM6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44203.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1074_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14405..15145
DNA (741bp) protein (247aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQM7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44204.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1074_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15145..15945
DNA (801bp) protein (267aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQM8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44205.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1074_curated_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15952..18051
DNA (2100bp) protein (700aa)
Quinohemoprotein alcohol dehydrogenase ADH IIB {ECO:0000313|EMBL:AKH44206.1}; EC=1.1.9.1 {ECO:0000313|EMBL:AKH44206.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Quinohemoprotein alcohol dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQM9_9SPHN
quinohemoprotein alcohol dehydrogenase
scnpilot_p_inoc_scaffold_1074_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18199..20328
DNA (2130bp) protein (710aa)
Quinohemoprotein alcohol dehydrogenase ADH IIB {ECO:0000313|EMBL:AKH42200.1}; EC=1.1.9.1 {ECO:0000313|EMBL:AKH42200.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Pyrrolo-quinoline quinone n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V689_SPHWW
pyrrolo-quinoline quinone
scnpilot_p_inoc_scaffold_1074_curated_17
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20334..20798
DNA (465bp) protein (155aa)
50S ribosomal protein L21 n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K8T8_9SPHN
50S ribosomal protein L21 {ECO:0000313|EMBL:EQB29823.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
50S ribosomal protein L21
scnpilot_p_inoc_scaffold_1074_curated_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20928..22166)
DNA (1239bp) protein (413aa)
Outer membrane efflux protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAR9_9SPHN
Outer membrane efflux protein {ECO:0000313|EMBL:AKH42874.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
outer membrane efflux protein
scnpilot_p_inoc_scaffold_1074_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22171..25290)
DNA (3120bp) protein (1040aa)
CzcA family heavy metal efflux protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAS0_9SPHN
Cobalt-zinc-cadmium resistance protein CzcA {ECO:0000313|EMBL:AKH42875.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
heavy metal efflux system protein
scnpilot_p_inoc_scaffold_1074_curated_20
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25297..26415)
DNA (1119bp) protein (373aa)
RND family efflux transporter MFP subunit n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAS1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEO89105.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
RND family efflux transporter MFP subunit
scnpilot_p_inoc_scaffold_1074_curated_21
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26514..27170
DNA (657bp) protein (219aa)
Two component transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAS2_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:KEO93172.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain); K02483 two-component system, OmpR family, response regulator
scnpilot_p_inoc_scaffold_1074_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27167..28531
DNA (1365bp) protein (455aa)
Virulence sensor histidine kinase PhoQ {ECO:0000313|EMBL:AKH42878.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH42878.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAS3_9SPHN
integral membrane sensor signal transduction histidine kinase
Displaying 22 items

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