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scnpilot_p_inoc_scaffold_952_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_952_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..636)
DNA (636bp) protein (212aa)
50S ribosomal protein L2 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIQ6_9SPHN
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
scnpilot_p_inoc_scaffold_952_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(649..960)
DNA (312bp) protein (104aa)
50S ribosomal protein L23 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y529_9SPHN
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
scnpilot_p_inoc_scaffold_952_curated_3
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(953..1579)
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=2 Tax=Novosphingobium RepID=F6IMC0_9SPHN
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_952_curated_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1583..2341)
DNA (759bp) protein (253aa)
50S ribosomal protein L3 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0E6_9SPHN
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
scnpilot_p_inoc_scaffold_952_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2597..2908)
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZS93_9SPHN
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
scnpilot_p_inoc_scaffold_952_curated_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3068..4243)
DNA (1176bp) protein (392aa)
tuf; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
Elongation factor Tu n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIR2_9SPHN
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_952_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4334..6427)
DNA (2094bp) protein (698aa)
Elongation factor G n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y533_9SPHN
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
fusA; elongation factor G; K02355 elongation factor G
scnpilot_p_inoc_scaffold_952_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6547..7017)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJ87_9SPHN
30S ribosomal protein S7 {ECO:0000313|EMBL:AKH41141.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
scnpilot_p_inoc_scaffold_952_curated_9
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7190..7561)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=2 Tax=Erythrobacter RepID=RS12_ERYLH
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
30S ribosomal protein S12 {ECO:0000255|HAMAP-Rule:MF_00403}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_952_curated_10
Loktanella vestfoldensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8110..8865)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V395_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ06952.1}; TaxID=314232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella vestfoldensis SKA53.;"
hypothetical protein
scnpilot_p_inoc_scaffold_952_curated_11
Loktanella vestfoldensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8862..9458)
DNA (597bp) protein (199aa)
3-hydroxydecanoyl-ACP dehydratase {ECO:0000313|EMBL:EAQ06953.1}; EC=4.2.1.59 {ECO:0000313|EMBL:EAQ06953.1};; TaxID=314232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella vestfoldensis SKA53.;"
3-hydroxydecanoyl-ACP dehydratase n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V396_9RHOB
scnpilot_p_inoc_scaffold_952_curated_12
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10132..10851)
DNA (720bp) protein (240aa)
Calcium-binding ef-hand protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L6X1_9SPHN
Calcium-binding ef-hand protein {ECO:0000313|EMBL:EIZ80189.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
scnpilot_p_inoc_scaffold_952_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10935..11450)
DNA (516bp) protein (172aa)
putative peptidyl-prolyl cis-trans isomerase; K03773 FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ86_9SPHN
scnpilot_p_inoc_scaffold_952_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11537..12325)
DNA (789bp) protein (263aa)
LysR family transcriptional regulator n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9A0_ERYLH
Glycine cleavage system transcriptional activator {ECO:0000313|EMBL:AKH41137.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_952_curated_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12407..12817)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WB18_9SPHN
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
apaG; ApaG protein; K06195 ApaG protein
scnpilot_p_inoc_scaffold_952_curated_16
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12873..13193
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00035ECE98
Uncharacterized protein {ECO:0000313|EMBL:KCZ56841.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
Excalibur
scnpilot_p_inoc_scaffold_952_curated_17
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13253..13738
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MFX1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KKC26150.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_952_curated_18
unknown

Not on your lists

comp(13702..14319)
DNA (618bp) protein (206aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_952_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14426..15634)
DNA (1209bp) protein (403aa)
O-succinylhomoserine sulfhydrylase {ECO:0000313|EMBL:AKH42208.1}; EC=2.5.1.- {ECO:0000313|EMBL:AKH42208.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
metB; cystathionine gamma-synthase; K10764 O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
Cystathionine gamma-synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ81_9SPHN
scnpilot_p_inoc_scaffold_952_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15723..17024
DNA (1302bp) protein (434aa)
Putative dolichyl-phosphate-mannose--protein mannosyltransferase {ECO:0000313|EMBL:AKH42210.1}; EC=2.4.1.109 {ECO:0000313|EMBL:AKH42210.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PDT4_9SPHN
hypothetical protein
scnpilot_p_inoc_scaffold_952_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17034..17216)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Robiginitomaculum antarcticum RepID=UPI0003602DD4
Uncharacterized protein {ECO:0000313|EMBL:AKH42211.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_952_curated_22
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17339..18463)
DNA (1125bp) protein (375aa)
dolichol-phosphate mannosyltransferase (EC:2.4.1.83); K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
Dolichol monophosphate mannose synthase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HGD6_9SPHN
Dolichol monophosphate mannose synthase {ECO:0000313|EMBL:EQB12082.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
scnpilot_p_inoc_scaffold_952_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18474..19532)
DNA (1059bp) protein (353aa)
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:AKH42213.1}; EC=1.1.1.85 {ECO:0000313|EMBL:AKH42213.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0G1_9SPHN
scnpilot_p_inoc_scaffold_952_curated_24
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19529..20131)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N981_ERYLH
DNA repair protein RecO {ECO:0000313|EMBL:AKH42214.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K03584 DNA repair protein RecO (recombination protein O)
scnpilot_p_inoc_scaffold_952_curated_25
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20230..20718
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000369BAE3
Uncharacterized protein {ECO:0000313|EMBL:KGB52532.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
scnpilot_p_inoc_scaffold_952_curated_26
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20737..21006)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VHM4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS44099.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
scnpilot_p_inoc_scaffold_952_curated_27
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21080..21328)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIS3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48255.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_952_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21366..21920)
DNA (555bp) protein (185aa)
CrtK protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E74C
TspO/MBR family protein {ECO:0000313|EMBL:AKH42217.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TspO and MBR like proteins; K07185 tryptophan-rich sensory protein
scnpilot_p_inoc_scaffold_952_curated_29
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22058..22795)
DNA (738bp) protein (246aa)
putative hemolysin; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
Putative hemolysin n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJA2_9SPHN
Putative hemolysin {ECO:0000313|EMBL:GAD48257.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_952_curated_30
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22861..23421
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N976_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AKH42219.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
Displaying items 1-30 of 41 in total

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