ggKbase home page

scnpilot_p_inoc_scaffold_1099_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1099_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..823)
DNA (822bp) protein (274aa)
DNA polymerase III subunit delta' (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
DNA polymerase III subunit delta n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A011_9SPHN
DNA polymerase III subunit delta {ECO:0000313|EMBL:GAD50979.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1099_curated_2
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(820..1458)
DNA (639bp) protein (213aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
dTMP kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9]
Thymidylate kinase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EJ07_9SPHN
scnpilot_p_inoc_scaffold_1099_curated_3
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1455..2612)
DNA (1158bp) protein (386aa)
D-alanyl-D-alanine carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002FF09D9
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
scnpilot_p_inoc_scaffold_1099_curated_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2653..3666)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YQL3_9SPHN
Rare lipoprotein A {ECO:0000313|EMBL:GAO56102.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sporulation-like protein; K03642 rare lipoprotein A
scnpilot_p_inoc_scaffold_1099_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3650..4732)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A898_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50983.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
lytic murein transglycosylase
scnpilot_p_inoc_scaffold_1099_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4819..5673)
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJV5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41598.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1099_curated_7
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5996..6538)
DNA (543bp) protein (181aa)
Flavin reductase domain protein, FMN-binding protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0X7_PARDP
Flavin reductase {ECO:0000313|EMBL:KGJ12115.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
flavin reductase domain-containing protein
scnpilot_p_inoc_scaffold_1099_curated_8
unknown

Not on your lists

comp(6549..7088)
DNA (540bp) protein (180aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1099_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7122..8534)
DNA (1413bp) protein (471aa)
Dihydrolipoyl dehydrogenase {ECO:0000313|EMBL:AKH41595.1}; EC=1.8.1.4 {ECO:0000313|EMBL:AKH41595.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A5K5_9SPHN
scnpilot_p_inoc_scaffold_1099_curated_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8536..9054)
DNA (519bp) protein (173aa)
hypothetical protein, partial n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488B4C
Uncharacterized protein {ECO:0000313|EMBL:GAO37929.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1099_curated_11
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9054..9386)
DNA (333bp) protein (111aa)
acyl-CoA thioesterase (EC:3.1.2.-); K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
acyl-CoA thioester hydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B602A1
Acyl-CoA thioester hydrolase {ECO:0000313|EMBL:KHL26752.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
scnpilot_p_inoc_scaffold_1099_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9618..10901)
DNA (1284bp) protein (428aa)
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000313|EMBL:AKH41592.1}; EC=2.3.1.12 {ECO:0000313|EMBL:AKH41592.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
dihydrolipoamide acetyltransferase, long form (EC:2.3.1.61); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
Dihydrolipoamide acetyltransferase, long form n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6Y7_NOVAD
scnpilot_p_inoc_scaffold_1099_curated_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11051..11503
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A480_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49563.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1099_curated_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11605..13926)
DNA (2322bp) protein (774aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ribonuclease R (EC:3.1.-.-); K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZW13_9SPHN
scnpilot_p_inoc_scaffold_1099_curated_15
Hyphomonas adhaerens, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14120..16147
DNA (2028bp) protein (676aa)
peptidase family M3; K01392 thimet oligopeptidase [EC:3.4.24.15]
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4P8U7_9CAUL
Tetraacyldisaccharide-1-P 4'-kinase {ECO:0000313|EMBL:KCZ85109.1}; TaxID=1280949 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas adhaerens MHS-3.;"
scnpilot_p_inoc_scaffold_1099_curated_16
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16248..17897)
DNA (1650bp) protein (550aa)
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
prolyl-tRNA synthetase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002FD5C30
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_1099_curated_17
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17918..18484)
DNA (567bp) protein (189aa)
Putative polyhydroxyalkanoate synthesis repressor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y8J2_9SPHN
Putative polyhydroxyalkanoate synthesis repressor {ECO:0000313|EMBL:GAD49566.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
polyhydroxyalkanoate synthesis repressor PhaR
scnpilot_p_inoc_scaffold_1099_curated_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18559..19617)
DNA (1059bp) protein (353aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YM76_9SPHN
scnpilot_p_inoc_scaffold_1099_curated_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19604..21253)
DNA (1650bp) protein (550aa)
Putative major facilitator superfamily transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A484_9SPHN
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:GAD49568.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
major facilitator family transporter
scnpilot_p_inoc_scaffold_1099_curated_20
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21299..21733)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZW18_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49569.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1099_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21735..22262)
DNA (528bp) protein (176aa)
Colicin V production protein, hypothetical n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NAI3_ERYLH
Colicin V production protein {ECO:0000313|EMBL:AKH41584.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
colicin V production protein; K03558 membrane protein required for colicin V production
scnpilot_p_inoc_scaffold_1099_curated_22
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22274..23638)
DNA (1365bp) protein (455aa)
DNA repair protein radA n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P7I8_9SPHN
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
scnpilot_p_inoc_scaffold_1099_curated_23
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23710..26043
DNA (2334bp) protein (778aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YM80_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49572.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1099_curated_24
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26033..26500)
DNA (468bp) protein (156aa)
phosphotyrosine protein phosphatase (EC:3.1.3.48); K01104 protein-tyrosine phosphatase [EC:3.1.3.48]
Protein tyrosine phosphatase {ECO:0000313|EMBL:EHP91552.1}; EC=3.1.3.2 {ECO:0000313|EMBL:EHP91552.1};; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
Phosphotyrosine protein phosphatase n=2 Tax=Methylobacterium extorquens RepID=C5ASS3_METEA
scnpilot_p_inoc_scaffold_1099_curated_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26516..27646)
DNA (1131bp) protein (377aa)
Chaperone protein DnaJ n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6N1_NOVAD
molecular chaperone DnaJ; K03686 molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_1099_curated_26
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27720..27887)
DNA (168bp) protein (56aa)
Chaperone protein DnaK n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I3B7_9SPHN
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
molecular chaperone DnaK; K04043 molecular chaperone DnaK
Displaying 26 items

View Taxonomy