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scnpilot_p_inoc_scaffold_2626_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2626_curated_1
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..865)
DNA (864bp) protein (288aa)
DNA-binding protein Fis n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G974_NOVAD
ATPase AAA {ECO:0000313|EMBL:KHL25570.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
Fis family transcriptional regulator; K03974 psp operon transcriptional activator
scnpilot_p_inoc_scaffold_2626_curated_2
unknown

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1018..1173
DNA (156bp) protein (52aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2626_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1170..2078
DNA (909bp) protein (303aa)
phage-shock protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DF17
Phage shock protein A {ECO:0000313|EMBL:AKH41089.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
phage shock protein A, PspA; K03969 phage shock protein A
scnpilot_p_inoc_scaffold_2626_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2082..2375
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G971_NOVAD
hypothetical protein; K03970 phage shock protein B
Uncharacterized protein {ECO:0000313|EMBL:ABD25602.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_2626_curated_5
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2372..2752
DNA (381bp) protein (127aa)
Putative stress-responsive transcriptional regulator n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WI19_9SPHN
Phage-shock protein {ECO:0000313|EMBL:KEO86063.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
stress-responsive transcriptional regulator; K03973 phage shock protein C
scnpilot_p_inoc_scaffold_2626_curated_6
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2780..3079
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WI17_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAQ27724.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2626_curated_7
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3082..3429
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NC26_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC62765.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_2626_curated_8
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3480..3815
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0A8F
Uncharacterized protein {ECO:0000313|EMBL:KEO86065.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
scnpilot_p_inoc_scaffold_2626_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3827..4078
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NC30_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AKH41081.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2626_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4103..4510
DNA (408bp) protein (136aa)
Fe-S metabolism protein SufE n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DF0E
Sulfur acceptor protein CsdE {ECO:0000313|EMBL:AKH44284.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Fe-S center assembly protein; K02426 cysteine desulfuration protein SufE
scnpilot_p_inoc_scaffold_2626_curated_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4554..4865
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L4C1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP72010.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2626_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4866..5384)
DNA (519bp) protein (173aa)
carotene hydroxylase; K15746 beta-carotene 3-hydroxylase [EC:1.14.13.129]
Beta-carotene hydroxylase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VGJ1_9SPHN
Fatty acid hydroxylase superfamily protein {ECO:0000313|EMBL:AKH41078.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_2626_curated_13
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5401..5802)
DNA (402bp) protein (134aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WI03_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAQ27737.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
scnpilot_p_inoc_scaffold_2626_curated_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5989..6354
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIE8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47847.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2626_curated_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6431..7864
DNA (1434bp) protein (478aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33 4.2.1.35); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZC1_9SPHN
scnpilot_p_inoc_scaffold_2626_curated_16
unknown

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7896..8117
DNA (222bp) protein (74aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2626_curated_17
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8117..8719
DNA (603bp) protein (201aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YI04_9SPHN
scnpilot_p_inoc_scaffold_2626_curated_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8769..9092
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y491_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47851.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2626_curated_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9097..9330
DNA (234bp) protein (78aa)
Putative BolA-like protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIF2_9SPHN
Putative BolA-like protein {ECO:0000313|EMBL:GAD47852.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
BolA-like protein
scnpilot_p_inoc_scaffold_2626_curated_20
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9368..9697
DNA (330bp) protein (110aa)
Glutaredoxin n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PB60_9SPHN
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
glutaredoxin-like protein; K07390 monothiol glutaredoxin
scnpilot_p_inoc_scaffold_2626_curated_21
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9738..10052)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0728
Uncharacterized protein {ECO:0000313|EMBL:KEO88407.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2626_curated_22
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10494..11552)
DNA (1059bp) protein (353aa)
PEP-CTERM putative exosortase interaction domain-containing protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GD66_9SPHN
PEP-CTERM putative exosortase interaction domain-containing protein {ECO:0000313|EMBL:EJL27825.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2626_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11725..11967)
DNA (243bp) protein (81aa)
Error-prone DNA polymerase {ECO:0000313|EMBL:AKH43256.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AKH43256.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Error-prone DNA polymerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV72_9SPHN
DNA polymerase III subunit alpha
Displaying 23 items

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