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scnpilot_p_inoc_scaffold_1343_curated

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1343_curated_1
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2057)
DNA (2055bp) protein (685aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2]
NAD-dependent DNA ligase LigA n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6C14B
scnpilot_p_inoc_scaffold_1343_curated_2
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2054..2449)
DNA (396bp) protein (132aa)
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B74C62
Uncharacterized protein {ECO:0000313|EMBL:AJR22944.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1343_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2561..4234)
DNA (1674bp) protein (558aa)
DNA repair protein RecN n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZT8_9SPHN
DNA repair protein RecN {ECO:0000313|EMBL:AKH41319.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ATPase; K03631 DNA repair protein RecN (Recombination protein N)
scnpilot_p_inoc_scaffold_1343_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4317..4964)
DNA (648bp) protein (216aa)
Outer membrane protein assembly factor BamD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7K1_NOVAD
DNA uptake lipoprotein; K05807 putative lipoprotein
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_1343_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5035..5958)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G554_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:AKH41314.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1343_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6082..6714
DNA (633bp) protein (211aa)
Putative transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7M3_NOVAD
TetR family regulatory protein {ECO:0000313|EMBL:AKH41313.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TetR family transcriptional regulator
scnpilot_p_inoc_scaffold_1343_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6711..7736
DNA (1026bp) protein (342aa)
Multifunctional cyclase-dehydratase-3-O-methyl transferase TcmN {ECO:0000313|EMBL:AKH41312.1}; EC=2.1.1.- {ECO:0000313|EMBL:AKH41312.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
O-methyltransferase family 2 n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1JZB0_DESFR
O-methyltransferase
scnpilot_p_inoc_scaffold_1343_curated_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7805..9622)
DNA (1818bp) protein (606aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Elongation factor 4 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIT1_9SPHN
GTP-binding protein LepA; K03596 GTP-binding protein LepA
scnpilot_p_inoc_scaffold_1343_curated_9
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9671..11890)
DNA (2220bp) protein (740aa)
Sensory box/GGDEF family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9U4_ERYLH
sensory box/GGDEF family protein
Sensory box/GGDEF family protein {ECO:0000313|EMBL:ABC63547.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_1343_curated_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12021..14732)
DNA (2712bp) protein (904aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8E4_NOVAD
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ABD25879.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_1343_curated_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14959..16275
DNA (1317bp) protein (439aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8E6_NOVAD
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ABD25877.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_1343_curated_12
unknown

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comp(16313..16702)
DNA (390bp) protein (130aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1343_curated_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16702..17829)
DNA (1128bp) protein (376aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0761
scnpilot_p_inoc_scaffold_1343_curated_14
unknown

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comp(17988..18521)
DNA (534bp) protein (178aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1343_curated_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18571..19323)
DNA (753bp) protein (251aa)
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:KHS45812.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KHS45812.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8F1_NOVAD
scnpilot_p_inoc_scaffold_1343_curated_16
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19374..19772)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GPW7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL24823.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1343_curated_17
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19808..20743)
DNA (936bp) protein (312aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
malonyl CoA-ACP transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJB7_9SPHN
scnpilot_p_inoc_scaffold_1343_curated_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20783..21607)
DNA (825bp) protein (275aa)
Putative murein peptide carboxypeptidase {ECO:0000313|EMBL:AKH41301.1}; EC=3.4.16.- {ECO:0000313|EMBL:AKH41301.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
muramoyltetrapeptide carboxypeptidase (EC:3.4.17.13); K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
Putative LD-carboxypeptidase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0I2_9SPHN
scnpilot_p_inoc_scaffold_1343_curated_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21667..23139
DNA (1473bp) protein (491aa)
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZSD4_9SPHN
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000313|EMBL:GAD48274.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1343_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23255..23767)
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKY9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41394.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1343_curated_21
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24191..24601
DNA (411bp) protein (137aa)
30S ribosomal protein S6 n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E7B2
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
scnpilot_p_inoc_scaffold_1343_curated_22
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24601..24825
DNA (225bp) protein (75aa)
30S ribosomal protein S18 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIU3_9SPHN
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
scnpilot_p_inoc_scaffold_1343_curated_23
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24839..25447
DNA (609bp) protein (203aa)
50S ribosomal protein L9 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y570_9SPHN
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9
scnpilot_p_inoc_scaffold_1343_curated_24
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25555..26136)
DNA (582bp) protein (194aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
scnpilot_p_inoc_scaffold_1343_curated_25
Klebsiella variicola CAG:634, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26314..26652)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Klebsiella variicola CAG:634 RepID=R5X720_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:CDA00337.1}; TaxID=1263083 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella; environmental samples.;" source="Klebsiella variicola CAG:634.;"
scnpilot_p_inoc_scaffold_1343_curated_26
unknown

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comp(26966..27673)
DNA (708bp) protein (236aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1343_curated_27
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27719..28651)
DNA (933bp) protein (311aa)
ribosomal protein S6 modification protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B4DCB0
Ribosomal protein S6 modification protein {ECO:0000313|EMBL:AKH41295.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rimK; ribosomal protein S6 modification protein RimK
scnpilot_p_inoc_scaffold_1343_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28641..29105)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P860_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH41294.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1343_curated_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29237..31090)
DNA (1854bp) protein (618aa)
peptidyl-dipeptidase A; K01283 peptidyl-dipeptidase A [EC:3.4.15.1]
Peptidyl-dipeptidase A n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG07_9SPHN
Angiotensin-converting enzyme {ECO:0000313|EMBL:AKH41293.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_1343_curated_30
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31159..31917)
DNA (759bp) protein (253aa)
Arylesterase {ECO:0000313|EMBL:AKH41292.1}; EC=3.1.1.2 {ECO:0000313|EMBL:AKH41292.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Alpha/beta hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8G8_NOVAD
alpha/beta hydrolase
Displaying items 1-30 of 33 in total

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