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scnpilot_p_inoc_scaffold_967_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_967_curated_1
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..342)
DNA (342bp) protein (114aa)
Extracellular lipase n=1 Tax=Aeromonas hydrophila RepID=O05484_AERHY
Lipase {ECO:0000313|EMBL:KGY78335.1}; TaxID=644 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila.;"
extracellular lipase
scnpilot_p_inoc_scaffold_967_curated_2
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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719..1162
DNA (444bp) protein (148aa)
pseudouridine synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Pseudouridine synthase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EHS2_9SPHN
scnpilot_p_inoc_scaffold_967_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1159..1707
DNA (549bp) protein (183aa)
hypothetical protein; K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
Putative methyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIY9_9SPHN
Putative methyltransferase {ECO:0000313|EMBL:GAD48325.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_967_curated_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1714..3006)
DNA (1293bp) protein (431aa)
Putative major facilitator superfamily transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5D9_9SPHN
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:GAD48326.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
general substrate transporter
scnpilot_p_inoc_scaffold_967_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3100..5427
DNA (2328bp) protein (776aa)
ATP-dependent DNA helicase PcrA {ECO:0000313|EMBL:AKH41247.1}; EC=3.6.4.12 {ECO:0000313|EMBL:AKH41247.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
DNA and RNA helicase; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
DNA and RNA helicase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9M0_ERYLH
scnpilot_p_inoc_scaffold_967_curated_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5447..6838)
DNA (1392bp) protein (464aa)
Putative helicase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZSL2_9SPHN
Putative helicase {ECO:0000313|EMBL:GAD48329.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
DEAD/DEAH box helicase
scnpilot_p_inoc_scaffold_967_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6986..7597)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIZ3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48330.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_967_curated_8
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7750..9192
DNA (1443bp) protein (481aa)
FAD linked oxidase-like protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VQP3_9SPHN
FAD linked oxidase-like protein {ECO:0000313|EMBL:EZP83866.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
FAD linked oxidase-like protein
scnpilot_p_inoc_scaffold_967_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9258..10037
DNA (780bp) protein (260aa)
multidrug transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7B771
SapC {ECO:0000313|EMBL:AKH41242.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SapC
scnpilot_p_inoc_scaffold_967_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10266..11216)
DNA (951bp) protein (317aa)
N-formylglutamate amidohydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8U1_NOVAD
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:AKH41241.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
N-formylglutamate amidohydrolase
scnpilot_p_inoc_scaffold_967_curated_11
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11356..11730
DNA (375bp) protein (125aa)
Response regulator n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N9L1_ERYLH
response regulator; K13589 two-component system, cell cycle response regulator CpdR
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_967_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12044..13267
DNA (1224bp) protein (408aa)
Isocitrate dehydrogenase [NADP] {ECO:0000313|EMBL:AKH41232.1}; EC=1.1.1.42 {ECO:0000313|EMBL:AKH41232.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIZ7_9SPHN
scnpilot_p_inoc_scaffold_967_curated_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13504..15129)
DNA (1626bp) protein (542aa)
Potassium efflux system protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S6P2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE54566.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
potassium efflux system protein
scnpilot_p_inoc_scaffold_967_curated_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15314..17092
DNA (1779bp) protein (593aa)
Putative transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJI9_9SPHN
Putative transporter {ECO:0000313|EMBL:GAD48337.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
glutathione-regulated potassium-efflux system protein; K03455 monovalent cation:H+ antiporter-2, CPA2 family
scnpilot_p_inoc_scaffold_967_curated_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17127..19793)
DNA (2667bp) protein (889aa)
Alanine--tRNA ligase {ECO:0000313|EMBL:AKH41227.1}; EC=6.1.1.7 {ECO:0000313|EMBL:AKH41227.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGZ5_9SPHN
scnpilot_p_inoc_scaffold_967_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19891..20715)
DNA (825bp) protein (275aa)
Malonyl-[acyl-carrier protein] O-methyltransferase {ECO:0000313|EMBL:AKH41226.1}; EC=2.1.1.197 {ECO:0000313|EMBL:AKH41226.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B78978
methyltransferase
scnpilot_p_inoc_scaffold_967_curated_17
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20869..21420)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488527
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_p_inoc_scaffold_967_curated_18
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21647..22708)
DNA (1062bp) protein (354aa)
Protein RecA n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBC0_9SPHN
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
recA; recombinase A; K03553 recombination protein RecA
scnpilot_p_inoc_scaffold_967_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22841..24556)
DNA (1716bp) protein (572aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000307BAC2
Uncharacterized protein {ECO:0000313|EMBL:AKH41224.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_967_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24565..26118)
DNA (1554bp) protein (518aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000308C93C
Uncharacterized protein {ECO:0000313|EMBL:AKH41223.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_967_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26303..28741)
DNA (2439bp) protein (813aa)
two-component response regulator; K13587 two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3]
Putative two-component hybrid sensor and regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJJ2_9SPHN
Blue-light-activated protein {ECO:0000313|EMBL:AKH41222.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_967_curated_22
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28738..29340)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GV06_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL34275.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein; K09928 hypothetical protein
scnpilot_p_inoc_scaffold_967_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29523..30017)
DNA (495bp) protein (165aa)
SsrA-binding protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZSM5_9SPHN
SsrA-binding protein {ECO:0000313|EMBL:AKH41220.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SsrA-binding protein; K03664 SsrA-binding protein
scnpilot_p_inoc_scaffold_967_curated_24
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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30131..32107
DNA (1977bp) protein (659aa)
peptidase S9 n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225ED1F
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:EJL34278.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
peptidase S9 prolyl oligopeptidase
scnpilot_p_inoc_scaffold_967_curated_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32183..33085)
DNA (903bp) protein (301aa)
DNA topoisomerase 4 subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00936};; Topoisomerase IV subunit A {ECO:0000256|HAMAP-Rule:MF_00936}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
DNA topoisomerase IV subunit A (EC:5.99.1.3); K02621 topoisomerase IV subunit A [EC:5.99.1.-]
DNA topoisomerase 4 subunit A n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A026_9SPHN
Displaying 25 items

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