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scnpilot_p_inoc_scaffold_715_curated

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_715_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1158)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003793067
DNA-damage-inducible protein F {ECO:0000313|EMBL:AKH41198.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
MATE efflux family protein; K03327 multidrug resistance protein, MATE family
scnpilot_p_inoc_scaffold_715_curated_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1219..2496)
DNA (1278bp) protein (426aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:ABD27028.1}; EC=2.1.1.79 {ECO:0000313|EMBL:ABD27028.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G545_NOVAD
scnpilot_p_inoc_scaffold_715_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2584..3324)
DNA (741bp) protein (247aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000313|EMBL:AKH41201.1}; EC=1.8.-.- {ECO:0000313|EMBL:AKH41201.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P733_9SPHN
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3321..4016)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EBD1
Quinone-reactive Ni/Fe-hydrogenase B-type cytochrome subunit {ECO:0000313|EMBL:AKH41202.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4013..4777)
DNA (765bp) protein (255aa)
7-alpha-hydroxysteroid dehydrogenase {ECO:0000313|EMBL:AKH41203.1}; EC=1.1.1.159 {ECO:0000313|EMBL:AKH41203.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Oxidoreductase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J750_9SPHN
putative oxidoreductase protein
scnpilot_p_inoc_scaffold_715_curated_6
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5060..5371)
DNA (312bp) protein (104aa)
Excinuclease ABC C subunit domain protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EXT6_SPHCR
Putative endonuclease {ECO:0000313|EMBL:AJA09292.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease
scnpilot_p_inoc_scaffold_715_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5514..6152)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJ09_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48355.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
MOSC domain-containing protein
scnpilot_p_inoc_scaffold_715_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6271..7737
DNA (1467bp) protein (489aa)
Putative dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQG5_9SPHN
putative dioxygenase; K11159 carotenoid cleavage dioxygenase
Putative dioxygenase {ECO:0000313|EMBL:BAK68339.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_715_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7909..9111)
DNA (1203bp) protein (401aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ95_9SPHN
Amidohydrolase {ECO:0000313|EMBL:AKH41206.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative hydrolase
scnpilot_p_inoc_scaffold_715_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9296..9670)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62526
Uncharacterized protein {ECO:0000313|EMBL:AKH41207.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_11
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9831..10433)
DNA (603bp) protein (201aa)
Putative SAM-dependent methyltransferase protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A1P6_RHIET
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:KGB59128.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SAM-dependent methyltransferase
scnpilot_p_inoc_scaffold_715_curated_12
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10570..11166)
DNA (597bp) protein (199aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
NAD(P)H dehydrogenase (quinone); K01118 FMN-dependent NADH-azoreductase [EC:1.7.-.-]
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000370B408
scnpilot_p_inoc_scaffold_715_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11205..11654
DNA (450bp) protein (150aa)
Transcriptional regulator, HxlR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4G5_STAND
Putative HTH-type transcriptional regulator YybR {ECO:0000313|EMBL:AKH41209.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
HxlR family transcriptional regulator
scnpilot_p_inoc_scaffold_715_curated_14
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11847..13313)
DNA (1467bp) protein (489aa)
hypothetical protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; TaxID=2
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RLMN_NOVAD rbh
scnpilot_p_inoc_scaffold_715_curated_15
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13376..14038
DNA (663bp) protein (221aa)
Outer membrane protein-like n=2 Tax=Novosphingobium RepID=F6IH06_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHL26054.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_16
unknown

Not on your lists

14215..14637
DNA (423bp) protein (141aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_715_curated_17
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14925..15497
DNA (573bp) protein (191aa)
Intradiol ring-cleavage dioxygenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G757_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:AHE53365.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
intradiol ring-cleavage dioxygenase
scnpilot_p_inoc_scaffold_715_curated_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15505..16014)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5G0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48351.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_19
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16056..16715)
DNA (660bp) protein (220aa)
Transcriptional regulator, TetR family n=2 Tax=Proteobacteria RepID=Q13VT2_BURXL
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABE31807.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
scnpilot_p_inoc_scaffold_715_curated_20
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16712..17116)
DNA (405bp) protein (135aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=Q706S8_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF84954.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
scnpilot_p_inoc_scaffold_715_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17419..18048
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P963_9SPHN
Inner membrane protein YqiJ {ECO:0000313|EMBL:AKH41213.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_22
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18066..19799
DNA (1734bp) protein (578aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIL8_9SPHN
Inner membrane protein YqiK {ECO:0000313|EMBL:AKH41214.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_23
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20482..20685)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A5E153
Uncharacterized protein {ECO:0000313|EMBL:EQB34050.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_24
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20685..20864)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HK51_GLUDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP55996.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
scnpilot_p_inoc_scaffold_715_curated_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20867..21361)
DNA (495bp) protein (165aa)
Transcription elongation factor GreB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJJ5_9SPHN
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
GreA/GreB family elongation factor; K04760 transcription elongation factor GreB
scnpilot_p_inoc_scaffold_715_curated_26
unknown

Not on your lists

comp(21423..21800)
DNA (378bp) protein (126aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_715_curated_27
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22116..24086)
DNA (1971bp) protein (657aa)
lytic transglycosylase catalytic subunit; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-]
Putative lytic transglycosylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5F6_9SPHN
Putative lytic transglycosylase {ECO:0000313|EMBL:GAD48346.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_715_curated_28
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24189..25073
DNA (885bp) protein (295aa)
dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000255|HAMAP-Rule:MF_00418}; Short=HTPA synthase {ECO:0000255|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000255|HAMAP-Rule:MF_00418};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=DAPA_NOVAD rbh
scnpilot_p_inoc_scaffold_715_curated_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25199..27301
DNA (2103bp) protein (701aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E902_9SPHN
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:GAO54456.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_30
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27659..27919
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A794_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGD59252.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Displaying items 1-30 of 60 in total

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