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scnpilot_p_inoc_scaffold_715_curated

Search features with annotation key words

Displaying items 31-60 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_715_curated_31
unknown

Not on your lists

comp(28498..28830)
DNA (333bp) protein (111aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_715_curated_32
unknown

Not on your lists

comp(28960..30141)
DNA (1182bp) protein (394aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_715_curated_33
unknown

Not on your lists

30366..31388
DNA (1023bp) protein (341aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_715_curated_34
unknown

Not on your lists

comp(31426..31917)
DNA (492bp) protein (164aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_715_curated_35
unknown

Not on your lists

comp(31974..32369)
DNA (396bp) protein (132aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_715_curated_36
unknown

Not on your lists

32656..33018
DNA (363bp) protein (121aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_715_curated_37
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33435..35579
DNA (2145bp) protein (715aa)
Putative sensor histidine kinase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N7Y2_9RHIZ
Putative signal transduction histidine kinase {ECO:0000313|EMBL:KHS42716.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ATPase
scnpilot_p_inoc_scaffold_715_curated_38
Hyphomonas hirschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35588..36226
DNA (639bp) protein (213aa)
Putative DNA-binding response regulator n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C2R1_HYPNA
putative DNA-binding response regulator
Putative DNA-binding response regulator {ECO:0000313|EMBL:KCZ95782.1}; TaxID=1280951 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas hirschiana VP5.;"
scnpilot_p_inoc_scaffold_715_curated_39
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36372..37301
DNA (930bp) protein (310aa)
UPI0003CFBB52 related cluster n=1 Tax=unknown RepID=UPI0003CFBB52
Uncharacterized protein {ECO:0000313|EMBL:ESZ89174.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
scnpilot_p_inoc_scaffold_715_curated_40
unknown

Not on your lists

37259..37861
DNA (603bp) protein (201aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_715_curated_41
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38708..41842)
DNA (3135bp) protein (1045aa)
hsdR; type I restriction enzyme EcoR124II R protein (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Pseudomonas sp. GM41(2012) RepID=J2ZML1_9PSED
Restriction endonuclease {ECO:0000313|EMBL:KGB53858.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
scnpilot_p_inoc_scaffold_715_curated_42
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41835..43046)
DNA (1212bp) protein (404aa)
anticodon nuclease n=1 Tax=Pseudomonas pelagia RepID=UPI0003A70704
Uncharacterized protein {ECO:0000313|EMBL:KGB53857.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
prrC; anticodon nuclease
scnpilot_p_inoc_scaffold_715_curated_43
Moraxella macacae, Moraxella, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43043..44215)
DNA (1173bp) protein (391aa)
restriction modification system DNA specificity subunit; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Restriction modification system DNA specificity domain-containing protein n=1 Tax=Moraxella macacae 0408225 RepID=L2F8X0_9GAMM
Restriction modification system DNA specificity domain-containing protein {ECO:0000313|EMBL:ELA09509.1}; TaxID=1230338 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Moraxella.;" source="Moraxella macacae 0408225.;"
scnpilot_p_inoc_scaffold_715_curated_44
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44212..45756)
DNA (1545bp) protein (515aa)
hsdM; type I restriction-modification system, M subunit (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Type I site-specific deoxyribonuclease HsdM n=1 Tax=Roseobacter sp. MED193 RepID=A3X860_9RHOB
Type I restriction-modification protein subunit M {ECO:0000313|EMBL:KGB53855.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
scnpilot_p_inoc_scaffold_715_curated_45
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45823..46929)
DNA (1107bp) protein (369aa)
Site-specific recombinase XerD-like protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SMI0_METPP
Recombinase XerC {ECO:0000313|EMBL:EXS68203.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
site-specific recombinase XerD-like protein
scnpilot_p_inoc_scaffold_715_curated_46
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46936..47412)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SMI1_METPP
Uncharacterized protein {ECO:0000313|EMBL:EXS68202.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_47
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47418..47585)
DNA (168bp) protein (56aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00036C8D17
Uncharacterized protein {ECO:0000313|EMBL:KHS41596.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
scnpilot_p_inoc_scaffold_715_curated_48
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47691..48305)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GBZ3_9SPHN
hypothetical protein
Tax=GWF1_Sphingomonadales_63_6_curated
scnpilot_p_inoc_scaffold_715_curated_49
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48505..49737)
DNA (1233bp) protein (411aa)
integrase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DB9AC0
Symbiosis island integrase {ECO:0000313|EMBL:KHS41598.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
symbiosis island integrase
scnpilot_p_inoc_scaffold_715_curated_50
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50083..50259)
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EDB0
Zinc-binding protein {ECO:0000313|EMBL:AKH42087.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_51
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50256..51230)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y4Y5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48186.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ribonuclease
scnpilot_p_inoc_scaffold_715_curated_52
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51223..51828)
DNA (606bp) protein (202aa)
Maf-like protein PMI02_03130 n=1 Tax=Novosphingobium sp. AP12 RepID=J2PFA7_9SPHN
Maf-like protein PMI02_03130 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
nucleotide-binding protein; K06287 septum formation protein
scnpilot_p_inoc_scaffold_715_curated_53
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51838..52083)
DNA (246bp) protein (82aa)
Translation initiation factor IF-1 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZS33_9SPHN
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
translation initiation factor IF-1; K02518 translation initiation factor IF-1
scnpilot_p_inoc_scaffold_715_curated_54
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52318..55365
DNA (3048bp) protein (1016aa)
Outer membrane receptor protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3A4E6_9SPHN
Outer membrane receptor protein {ECO:0000313|EMBL:EJL25944.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
scnpilot_p_inoc_scaffold_715_curated_55
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55647..57587
DNA (1941bp) protein (647aa)
UvrABC system protein C n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJ31_9SPHN
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C
scnpilot_p_inoc_scaffold_715_curated_56
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57601..58287
DNA (687bp) protein (229aa)
Putative 5-formyltetrahydrofolate cyclo-ligase {ECO:0000313|EMBL:AKH44331.1}; EC=6.3.3.2 {ECO:0000313|EMBL:AKH44331.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TAH3_9RHIZ
5-formyltetrahydrofolate cyclo-ligase
scnpilot_p_inoc_scaffold_715_curated_57
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58258..59133)
DNA (876bp) protein (292aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 n=1 Tax=Novosphingobium sp. AP12 RepID=J3AGL9_9SPHN
DNA-directed RNA polymerase specialized sigma subunit, sigma24 {ECO:0000313|EMBL:EJL30929.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_715_curated_58
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59136..59588)
DNA (453bp) protein (151aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Alkylhydroperoxidase like protein, AhpD family n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EZ66_SPHCR
alkylhydroperoxidase-like protein
scnpilot_p_inoc_scaffold_715_curated_59
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59669..61735)
DNA (2067bp) protein (689aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I8G9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB07975.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_715_curated_60
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61896..62414)
DNA (519bp) protein (173aa)
Acyl-CoA thioesterase 2 {ECO:0000313|EMBL:AKH42080.1}; EC=3.1.2.- {ECO:0000313|EMBL:AKH42080.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
palmitoyl-CoA hydrolase (EC:3.1.2.2); K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
Palmitoyl-CoA hydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9G4_NOVAD
Displaying items 31-60 of 60 in total

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