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scnpilot_p_inoc_scaffold_715_curated_57

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(58258..59133)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase specialized sigma subunit, sigma24 n=1 Tax=Novosphingobium sp. AP12 RepID=J3AGL9_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 73.6
  • Coverage: 280.0
  • Bit_score: 399
  • Evalue 3.60e-108
DNA-directed RNA polymerase specialized sigma subunit, sigma24 {ECO:0000313|EMBL:EJL30929.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.6
  • Coverage: 280.0
  • Bit_score: 399
  • Evalue 5.00e-108
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 69.9
  • Coverage: 282.0
  • Bit_score: 388
  • Evalue 2.60e-105

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Taxonomy

Novosphingobium sp. AP12 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 876
ATGGAGCCGCAGCACAGCCCGGCCGCCTTTGAGCAGCATCGCGCGATGTTGCTGCGTGTCGCCTATCGGATGCTCGGCTCCATGGCCGATGCGGAAGATATGGTGCAGGAAGCCTGGCTGCGCTGGGCGCGGACAGACAGGGAAGCGGTGGAAGTGCCCGCCGCTTTCCTGCGCCGCGTCGTCACGCGCCTGTGCCTGGACCAGCTCAAATCCGCCCGCGCCCGGCGGGAGGACTATTCCGGGCCTTGGCTGCCCGAGCCCGTGCTGGACGAGGAGCCGGAGGACGATGTCACCCTGCCCCTGATGCTCGCGCTCGAACGGCTCTCCCCGCTCGAACGCGCGGCGTTCCTGCTGCACGATGTGTTCGGGGAAAGCTTCGAGAATATCGCCGGGTCGCTCGGCCGCGATGCCGCTGCATGCCGCCAGCTTGCCACGCGAGCGCGGCGCAATGTGCAGGCGGAACGGGCGCGCTTTCCCGTCCAGCGCGAAGAAGGCCGCCAGATCGCGGAAGCCTTCTTCGACGCATCGCGCAGCGGCGATGTCGCCGGGCTGAGCACTCTGCTGGCCGATCAGGTGAGCTTCTATTCCGATGGCGGCGGCAAGCGCCCCGCCGTGGCGCGCGTGCTGCGCGGCCGCGCCATCGTCTCCCGCGCGCTGGCAGCCATTGCCCGTTTGACCAACATGGGGTTCACCGGCCCGGCCCGGCCAGAGCTGATCCAATATGGCTTCATCAACGGGTTGCCCGGTTTCGTGACGCAGGAAAGCGACGGCGAAATCCAGACCACTGCCCTGCTGCTGGAAGAGGGCCGCATCCGGGCGATCTATGTGATGCGCAATCCCGACAAGCTAACGGGCATCAAGGCCCGGCTGAACTGA
PROTEIN sequence
Length: 292
MEPQHSPAAFEQHRAMLLRVAYRMLGSMADAEDMVQEAWLRWARTDREAVEVPAAFLRRVVTRLCLDQLKSARARREDYSGPWLPEPVLDEEPEDDVTLPLMLALERLSPLERAAFLLHDVFGESFENIAGSLGRDAAACRQLATRARRNVQAERARFPVQREEGRQIAEAFFDASRSGDVAGLSTLLADQVSFYSDGGGKRPAVARVLRGRAIVSRALAAIARLTNMGFTGPARPELIQYGFINGLPGFVTQESDGEIQTTALLLEEGRIRAIYVMRNPDKLTGIKARLN*