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scnpilot_p_inoc_scaffold_1039

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1039_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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474..4649
DNA (4176bp) protein (1392aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZY89_9SPHN rbh
DNA-directed RNA polymerase subunit beta
scnpilot_p_inoc_scaffold_1039_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4727..9031
DNA (4305bp) protein (1435aa)
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:AKH43665.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AKH43665.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadale
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHS4_9SPHN rbh
scnpilot_p_inoc_scaffold_1039_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9256..10587)
DNA (1332bp) protein (444aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1219035 species="Bacteria; P
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17 6.1.1.24)
Glutamate--tRNA ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHS1_9SPHN rbh
scnpilot_p_inoc_scaffold_1039_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10636..12291)
DNA (1656bp) protein (552aa)
nadE; NAD synthetase (EC:6.3.1.5)
Glutamine-dependent NAD(+) synthetase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZY83_9SPHN rbh
Glutamine-dependent NAD(+) synthetase {ECO:0000313|EMBL:GAD47493.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
scnpilot_p_inoc_scaffold_1039_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12465..13937)
DNA (1473bp) protein (491aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB93_NOVAD
scnpilot_p_inoc_scaffold_1039_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13999..14313
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHB8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH42984.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alterer
hypothetical protein
scnpilot_p_inoc_scaffold_1039_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14422..14658
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZQ45_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47489.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_1039_8
RLO_Sphingomonadales_63_15, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14700..15332)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G8T2_9SPHN
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
scnpilot_p_inoc_scaffold_1039_9
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15468..16178)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W4P5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14671.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
scnpilot_p_inoc_scaffold_1039_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16261..16614
DNA (354bp) protein (118aa)
UPF0145 protein NT2_01_02570 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZY79_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH42981.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alterer
hypothetical protein
scnpilot_p_inoc_scaffold_1039_11
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16726..17469
DNA (744bp) protein (248aa)
Probable transcriptional regulatory protein Y88_2002 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5L8_9SPHN rbh
Probable transcriptional regulatory protein Y88_2002 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosp
hypothetical protein
scnpilot_p_inoc_scaffold_1039_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17603..18076
DNA (474bp) protein (158aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHB4_9SPHN
ruvC; Holliday junction resolvase
scnpilot_p_inoc_scaffold_1039_13
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18076..18384
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EAY5_9SPHN
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:KHK92724.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source=
polysaccharide biosynthesis protein
scnpilot_p_inoc_scaffold_1039_14
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18426..18773
DNA (348bp) protein (116aa)
ArsC family transcriptional regulator n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HMD6_9SPHN
ArsC family transcriptional regulator {ECO:0000313|EMBL:EQB17541.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
ArsC family transcriptional regulator
scnpilot_p_inoc_scaffold_1039_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18914..19804)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7ENJ7_9RHOB rbh
Bestrophin, RFP-TM, chloride channel {ECO:0000313|EMBL:AKH42974.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" so
hypothetical protein rbh
scnpilot_p_inoc_scaffold_1039_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19815..20552)
DNA (738bp) protein (246aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHA8_9SPHN rbh
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiqui
scnpilot_p_inoc_scaffold_1039_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20624..21877
DNA (1254bp) protein (418aa)
aspartate kinase (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; No
Aspartokinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G334_NOVAD rbh
scnpilot_p_inoc_scaffold_1039_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21878..22951)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJQ8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD48695.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
PepSY-associated TM helix family protein
scnpilot_p_inoc_scaffold_1039_19
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22984..25197)
DNA (2214bp) protein (738aa)
Outer membrane receptor protein n=1 Tax=Sphingobium sp. AP49 RepID=J2KYQ6_9SPHN rbh
TonB-dependent receptor
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
scnpilot_p_inoc_scaffold_1039_20
RLO_Gammaproteobacteria_52_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25302..25832)
DNA (531bp) protein (177aa)
Tax=RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated
scnpilot_p_inoc_scaffold_1039_21
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26074..28233)
DNA (2160bp) protein (720aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:R
Catalase-peroxidase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DXK0_9GAMM
catalase/peroxidase HPI
scnpilot_p_inoc_scaffold_1039_22
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28463..29473
DNA (1011bp) protein (337aa)
2-nitropropane dioxygenase, NPD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G332_NOVAD rbh
2-nitropropane dioxygenase {ECO:0000313|EMBL:KHS46858.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphing
2-nitropropane dioxygenase
scnpilot_p_inoc_scaffold_1039_23
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29488..29898
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XY18_RAMTT
Putative N-acetyltransferase YhfO {ECO:0000313|EMBL:KFZ90972.1}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
hypothetical protein
Displaying 23 items

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