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scnpilot_p_inoc_scaffold_5056_1

Organism: SCNpilot_P_inoc_Novosphingobium_63_5

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(1..339)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon similarity UNIPROT
DB: UniProtKB
  • Identity: 82.7
  • Coverage: 110.0
  • Bit_score: 183
  • Evalue 1.30e-43
ribosomal large subunit pseudouridine synthase E n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B61B22 similarity UNIREF
DB: UNIREF100
  • Identity: 84.1
  • Coverage: 113.0
  • Bit_score: 195
  • Evalue 3.00e-47
pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 82.7
  • Coverage: 110.0
  • Bit_score: 183
  • Evalue 2.60e-44

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Taxonomy

Sphingomonas taxi → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 339
GTGGCGCGGTTGACCCTGTTCAACAAACCCTACGGGGTGCTTTCTCAATTCACCGATCGCGGCACGGAGACTGCGCGCCAGACGCTGTCCGATTTCATCGCCCTGCCCGGCGTTTATCCCGCTGGCCGGCTGGATCGCGATAGCGAGGGGCTGCTCCTGTTGACGGATGATGGGCGCCTTCAGGCCCGCATTGCCGATCCGCGGTTCAAATTACCCAAGACATATCTGGTGCAGGTGGAAGGCGAGCCGAGCGAGGCTGGCCTTGAAGCCTTGCGAACCGGCATCCGTCTGAATGACGGCCCCACACGCCCAGCAGAAGTCGAGCGGATCGCCGATCCC
PROTEIN sequence
Length: 113
VARLTLFNKPYGVLSQFTDRGTETARQTLSDFIALPGVYPAGRLDRDSEGLLLLTDDGRLQARIADPRFKLPKTYLVQVEGEPSEAGLEALRTGIRLNDGPTRPAEVERIADP