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scnpilot_p_inoc_scaffold_12110_5

Organism: SCNpilot_P_inoc_Novosphingobium_63_5

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(3795..4097)

Top 3 Functional Annotations

Value Algorithm Source
Cold-shock DNA-binding protein family protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDR8_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 87.9
  • Coverage: 99.0
  • Bit_score: 172
  • Evalue 2.50e-40
CspA family cold shock protein {ECO:0000313|EMBL:KHS48037.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp similarity UNIPROT
DB: UniProtKB
  • Identity: 87.0
  • Coverage: 100.0
  • Bit_score: 176
  • Evalue 2.40e-41
cold-shock DNA-binding protein family protein similarity KEGG
DB: KEGG
  • Identity: 85.9
  • Coverage: 99.0
  • Bit_score: 170
  • Evalue 2.60e-40

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Taxonomy

Novosphingobium subterraneum → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 303
ATTTCCGCAGCCGATCTTCAGGTCGTTGGCGATGTGATCCCGGTCGAGCAGCGCGCTCCGGCTGCGCCGCAGCGTCAGCGCACTGGCGAGAAGGCCACCGGCACGGTGAAGTTCTTCAACTCCATGAAGGGCTTCGGCTTCATCACGCGTGACGATGGCGAGCCCGATGCGTTCGTGCATATCAGCGCAGTGGAACGGTCTGGCCTGTCGCAGCTCAACGAAGGCGACAAGCTGGAATTCGAACTCGAAGTCGATCGACGAGGCAAGTACTCGGCGGTCAACCTTGTGCCCGTTCAGGGCTGA
PROTEIN sequence
Length: 101
ISAADLQVVGDVIPVEQRAPAAPQRQRTGEKATGTVKFFNSMKGFGFITRDDGEPDAFVHISAVERSGLSQLNEGDKLEFELEVDRRGKYSAVNLVPVQG*