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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 51-100 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_11776 6 4175 bp 50.75 3.74 75.59
scnpilot_p_inoc_scaffold_11277 6 4307 bp 43.74 3.41 44.93
scnpilot_p_inoc_scaffold_12069 6 4108 bp 49.12 3.40 51.19
scnpilot_p_inoc_scaffold_4395 5 8291 bp 55.28 4.07 57.97
scnpilot_p_inoc_scaffold_3987 5 8811 bp 50.43 3.75 36.94
scnpilot_p_inoc_scaffold_10987 5 4386 bp 51.03 3.59 79.00
scnpilot_p_inoc_scaffold_11573 5 4224 bp 48.20 4.47 36.93
scnpilot_p_inoc_scaffold_10765
Species: Candidatus Paracaedibacter acanthamoebae (60%)
5 4450 bp 41.33 2.56 93.51
scnpilot_p_inoc_scaffold_12123 5 4093 bp 54.73 3.92 58.27
scnpilot_p_inoc_scaffold_9332 5 4919 bp 55.91 5.18 55.93
scnpilot_p_inoc_scaffold_15223
Order: Rhizobiales (60%)
5 4007 bp 51.19 2.43 81.16
scnpilot_p_inoc_scaffold_7583 5 5711 bp 50.11 4.83 51.74
scnpilot_p_inoc_scaffold_7846 5 5579 bp 55.57 4.79 62.59
scnpilot_p_inoc_scaffold_8543 5 5234 bp 52.67 4.18 54.57
scnpilot_p_inoc_scaffold_8816 5 5130 bp 49.73 4.80 47.89
scnpilot_p_inoc_scaffold_13019 5 5602 bp 50.16 4.23 42.04
scnpilot_p_inoc_scaffold_7892 5 5557 bp 44.03 3.05 81.90
scnpilot_p_inoc_scaffold_9398 5 4898 bp 52.20 3.74 76.07
scnpilot_p_inoc_scaffold_7643 5 5680 bp 54.68 4.91 62.17
scnpilot_p_inoc_scaffold_5836
Order: Burkholderiales (100%)
5 6830 bp 60.34 5.73 92.55
scnpilot_p_inoc_scaffold_8078 5 5444 bp 40.87 3.06 37.31
scnpilot_p_inoc_scaffold_6991 5 6026 bp 48.99 3.44 38.78
scnpilot_p_inoc_scaffold_11720
Phylum: Proteobacteria (80%)
5 4186 bp 54.09 11.43 90.95
scnpilot_p_inoc_scaffold_13611 5 5073 bp 52.57 4.38 44.29
scnpilot_p_inoc_scaffold_8647 5 5191 bp 52.73 4.31 43.81
scnpilot_p_inoc_scaffold_12017 5 4119 bp 54.48 3.61 55.13
scnpilot_p_inoc_scaffold_11492 5 4246 bp 54.12 3.53 55.53
scnpilot_p_inoc_scaffold_5927 5 6754 bp 52.16 3.98 43.00
scnpilot_p_inoc_scaffold_10209 4 4635 bp 52.86 3.50 35.73
scnpilot_p_inoc_scaffold_10723 4 4465 bp 51.53 3.49 39.84
scnpilot_p_inoc_scaffold_12079
Species: Candidatus Paracaedibacter acanthamoebae (50%)
4 4106 bp 36.09 2.92 74.82
scnpilot_p_inoc_scaffold_5705 4 6945 bp 45.13 4.54 33.43
scnpilot_p_inoc_scaffold_8971 4 5071 bp 53.36 3.31 60.82
scnpilot_p_inoc_scaffold_10993 4 4385 bp 46.66 4.17 39.48
scnpilot_p_inoc_scaffold_3497 4 9671 bp 50.46 3.66 88.94
scnpilot_p_inoc_scaffold_8741 4 5159 bp 54.68 3.87 55.59
scnpilot_p_inoc_scaffold_9320 4 4923 bp 52.98 3.81 46.07
scnpilot_p_inoc_scaffold_4455 4 8211 bp 53.94 4.71 35.29
scnpilot_p_inoc_scaffold_11869 4 4152 bp 54.36 4.23 69.87
scnpilot_p_inoc_scaffold_7321 4 5840 bp 48.37 3.98 38.42
scnpilot_p_inoc_scaffold_7584 4 5710 bp 54.15 4.12 78.39
scnpilot_p_inoc_scaffold_9347
Domain: Bacteria (50%)
4 4914 bp 42.21 4.55 73.44
scnpilot_p_inoc_scaffold_11885 4 4149 bp 54.86 3.94 54.01
scnpilot_p_inoc_scaffold_7591 4 5707 bp 49.52 4.28 76.91
scnpilot_p_inoc_scaffold_10553
Species: Novosphingobium tardaugens (50%)
4 4519 bp 39.37 3.85 31.60
scnpilot_p_inoc_scaffold_11641
Class: Alphaproteobacteria (50%)
4 4206 bp 52.57 2.85 73.32
scnpilot_p_inoc_scaffold_7603 4 5701 bp 52.36 4.81 47.94
scnpilot_p_inoc_scaffold_9109 4 5013 bp 53.50 4.43 49.01
scnpilot_p_inoc_scaffold_8806 4 5134 bp 47.74 3.27 88.47
scnpilot_p_inoc_scaffold_10824 4 4436 bp 51.24 6.59 46.53
Displaying items 51-100 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.