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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 1-50 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_695 68 48831 bp 48.83 15.47 92.63
scnpilot_p_inoc_scaffold_1877 23 15995 bp 45.43 3.43 99.18
scnpilot_p_inoc_scaffold_4368 13 8320 bp 54.80 4.87 83.33
scnpilot_p_inoc_scaffold_7266 12 5872 bp 49.15 3.45 60.90
scnpilot_p_inoc_scaffold_3872 12 10335 bp 51.42 3.86 67.46
scnpilot_p_inoc_scaffold_2928 12 10980 bp 50.48 3.65 54.67
scnpilot_p_inoc_scaffold_5874
Species: marine sediment metagenome (54.55%)
11 6800 bp 47.85 3.95 91.94
scnpilot_p_inoc_scaffold_4879 11 9323 bp 53.02 3.86 57.60
scnpilot_p_inoc_scaffold_4012 10 8782 bp 50.99 3.83 50.73
scnpilot_p_inoc_scaffold_1619 10 18278 bp 50.57 3.80 87.38
scnpilot_p_inoc_scaffold_6904 9 7686 bp 50.20 3.51 65.65
scnpilot_p_inoc_scaffold_5034 9 7557 bp 48.22 4.13 56.41
scnpilot_p_inoc_scaffold_10108 9 4662 bp 56.89 2.70 84.36
scnpilot_p_inoc_scaffold_4835 9 7771 bp 48.66 3.42 60.30
scnpilot_p_inoc_scaffold_5940 9 6738 bp 45.77 3.52 99.38
scnpilot_p_inoc_scaffold_7514 7 5742 bp 54.70 4.10 49.37
scnpilot_p_inoc_scaffold_6593 7 6969 bp 45.17 4.13 42.70
scnpilot_p_inoc_scaffold_10490 7 4542 bp 58.78 5.65 71.53
scnpilot_p_inoc_scaffold_4958 7 7646 bp 53.40 4.41 43.00
scnpilot_p_inoc_scaffold_7047
Species: GWC2_TM7_48_9 (57.14%)
7 5998 bp 47.48 3.70 95.93
scnpilot_p_inoc_scaffold_9590 7 4837 bp 49.58 3.26 41.68
scnpilot_p_inoc_scaffold_9355 7 4912 bp 55.66 3.85 64.43
scnpilot_p_inoc_scaffold_10090 7 4667 bp 50.67 3.89 44.55
scnpilot_p_inoc_scaffold_6714 7 6201 bp 47.88 3.97 33.43
scnpilot_p_inoc_scaffold_7921 7 5538 bp 48.57 3.85 66.47
scnpilot_p_inoc_scaffold_3649 7 9379 bp 50.60 4.03 72.64
scnpilot_p_inoc_scaffold_12264 7 4055 bp 58.05 3.22 80.35
scnpilot_p_inoc_scaffold_4585 7 8053 bp 52.92 4.69 59.31
scnpilot_p_inoc_scaffold_7712 7 5648 bp 52.48 4.62 54.98
scnpilot_p_inoc_scaffold_7740 7 5635 bp 51.71 3.57 45.04
scnpilot_p_inoc_scaffold_9760 7 4778 bp 56.36 4.05 75.28
scnpilot_p_inoc_scaffold_3973 7 8836 bp 43.78 3.89 42.37
scnpilot_p_inoc_scaffold_12064 7 4109 bp 48.87 3.39 83.16
scnpilot_p_inoc_scaffold_9773 7 4777 bp 37.70 4.02 40.38
scnpilot_p_inoc_scaffold_8239
Class: Betaproteobacteria (83.33%)
6 5369 bp 55.60 2.21 83.76
scnpilot_p_inoc_scaffold_8500 6 5252 bp 54.93 3.94 45.47
scnpilot_p_inoc_scaffold_3791 6 9126 bp 49.80 3.93 57.17
scnpilot_p_inoc_scaffold_12151 6 4086 bp 52.30 5.69 48.31
scnpilot_p_inoc_scaffold_11374 6 4277 bp 37.50 2.45 54.43
scnpilot_p_inoc_scaffold_8797 6 6469 bp 50.69 3.92 39.09
scnpilot_p_inoc_scaffold_6667 6 6228 bp 44.25 3.37 15.75
scnpilot_p_inoc_scaffold_8292
Species: Candidatus Paracaedibacter acanthamoebae (100%)
6 5348 bp 40.80 2.50 72.81
scnpilot_p_inoc_scaffold_10821 6 4437 bp 43.07 3.68 44.90
scnpilot_p_inoc_scaffold_11691 6 4195 bp 44.41 3.11 72.73
scnpilot_p_inoc_scaffold_6462
Domain: Bacteria (66.67%)
6 6357 bp 44.83 3.14 80.51
scnpilot_p_inoc_scaffold_5099 6 7491 bp 51.01 3.90 45.09
scnpilot_p_inoc_scaffold_10138 6 4654 bp 54.17 4.45 67.68
scnpilot_p_inoc_scaffold_7441 6 5777 bp 59.51 4.54 72.96
scnpilot_p_inoc_scaffold_8392 6 5306 bp 52.39 3.59 68.75
scnpilot_p_inoc_scaffold_5668 6 6979 bp 45.89 2.84 57.39
Displaying items 1-50 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.