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scnpilot_dereplicated_Eukaryote_unknown_15

SCNpilot_P_inoc_unknown_51_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.62 Longest contig: 48.83 Kbp Bin length: 1.07 Mbp GC content: 51.36 %
Contigs count: 183 Features count: 909 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 BSCG 2 / 51 ASCG 0 / 38

Description

not clear on coverage ESOM

Displaying items 1-50 of 183 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_11838 1 4161 bp 53.35 17.56 99.93
scnpilot_p_inoc_scaffold_695 68 48831 bp 48.83 15.47 92.63
scnpilot_p_inoc_scaffold_12231
Species: Entamoeba invadens (100%)
1 4063 bp 51.96 14.10 99.90
scnpilot_p_inoc_scaffold_11720
Phylum: Proteobacteria (80%)
5 4186 bp 54.09 11.43 90.95
scnpilot_p_inoc_scaffold_10222
Species: Trachipleistophora hominis (100%)
1 4630 bp 55.62 8.23 93.76
scnpilot_p_inoc_scaffold_7907 4 5545 bp 49.00 7.28 72.01
scnpilot_p_inoc_scaffold_10824 4 4436 bp 51.24 6.59 46.53
scnpilot_p_inoc_scaffold_5836
Order: Burkholderiales (100%)
5 6830 bp 60.34 5.73 92.55
scnpilot_p_inoc_scaffold_12151 6 4086 bp 52.30 5.69 48.31
scnpilot_p_inoc_scaffold_10490 7 4542 bp 58.78 5.65 71.53
scnpilot_p_inoc_scaffold_12487 3 4002 bp 53.10 5.47 59.30
scnpilot_p_inoc_scaffold_9332 5 4919 bp 55.91 5.18 55.93
scnpilot_p_inoc_scaffold_11470
Domain: Eukaryota (50%)
4 4252 bp 58.65 5.15 70.98
scnpilot_p_inoc_scaffold_7643 5 5680 bp 54.68 4.91 62.17
scnpilot_p_inoc_scaffold_8712 3 5169 bp 59.62 4.88 54.27
scnpilot_p_inoc_scaffold_11033
Species: Phytophthora parasitica (50%)
2 4376 bp 52.38 4.87 32.84
scnpilot_p_inoc_scaffold_4368 13 8320 bp 54.80 4.87 83.33
scnpilot_p_inoc_scaffold_7583 5 5711 bp 50.11 4.83 51.74
scnpilot_p_inoc_scaffold_12211
Species: Ruminococcus sp. 5_1_39BFAA (50%)
2 4068 bp 60.25 4.83 75.44
scnpilot_p_inoc_scaffold_7603 4 5701 bp 52.36 4.81 47.94
scnpilot_p_inoc_scaffold_8816 5 5130 bp 49.73 4.80 47.89
scnpilot_p_inoc_scaffold_7846 5 5579 bp 55.57 4.79 62.59
scnpilot_p_inoc_scaffold_5852
Class: Neoptera (50%)
4 6819 bp 53.15 4.73 43.69
scnpilot_p_inoc_scaffold_4455 4 8211 bp 53.94 4.71 35.29
scnpilot_p_inoc_scaffold_11176
Species: Meyerozyma guilliermondii (50%)
2 4332 bp 49.52 4.71 28.88
scnpilot_p_inoc_scaffold_10329
Species: Capsaspora owczarzaki (50%)
2 4599 bp 53.71 4.70 45.40
scnpilot_p_inoc_scaffold_4585 7 8053 bp 52.92 4.69 59.31
scnpilot_p_inoc_scaffold_12036 3 4115 bp 52.83 4.67 68.17
scnpilot_p_inoc_scaffold_4859 4 7740 bp 53.33 4.65 49.96
scnpilot_p_inoc_scaffold_7712 7 5648 bp 52.48 4.62 54.98
scnpilot_p_inoc_scaffold_9347
Domain: Bacteria (50%)
4 4914 bp 42.21 4.55 73.44
scnpilot_p_inoc_scaffold_5705 4 6945 bp 45.13 4.54 33.43
scnpilot_p_inoc_scaffold_7441 6 5777 bp 59.51 4.54 72.96
scnpilot_p_inoc_scaffold_10716 3 4468 bp 50.04 4.53 42.03
scnpilot_p_inoc_scaffold_10686 4 4478 bp 55.94 4.52 37.18
scnpilot_p_inoc_scaffold_14922 4 4271 bp 59.70 4.50 60.90
scnpilot_p_inoc_scaffold_11573 5 4224 bp 48.20 4.47 36.93
scnpilot_p_inoc_scaffold_7579
Species: Guillardia theta (50%)
2 5714 bp 54.20 4.46 50.67
scnpilot_p_inoc_scaffold_10138 6 4654 bp 54.17 4.45 67.68
scnpilot_p_inoc_scaffold_11984
Species: Strigamia maritima (50%)
2 4125 bp 55.10 4.44 58.62
scnpilot_p_inoc_scaffold_9109 4 5013 bp 53.50 4.43 49.01
scnpilot_p_inoc_scaffold_7905
Genus: Streptococcus (66.67%)
3 5548 bp 51.60 4.43 69.97
scnpilot_p_inoc_scaffold_4958 7 7646 bp 53.40 4.41 43.00
scnpilot_p_inoc_scaffold_7635 4 5686 bp 52.99 4.41 51.02
scnpilot_p_inoc_scaffold_8377
Species: Galdieria sulphuraria (50%)
2 5312 bp 59.96 4.41 79.69
scnpilot_p_inoc_scaffold_7689 4 5656 bp 50.64 4.40 80.25
scnpilot_p_inoc_scaffold_9246
Species: Capsaspora owczarzaki (100%)
1 4960 bp 55.00 4.39 45.30
scnpilot_p_inoc_scaffold_10764 2 4450 bp 52.34 4.38 99.78
scnpilot_p_inoc_scaffold_8067 3 5449 bp 54.80 4.38 24.17
scnpilot_p_inoc_scaffold_4059 4 8705 bp 54.88 4.38 73.89
Displaying items 1-50 of 183 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.