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scnpilot_p_inoc_scaffold_2162_7

Organism: scnpilot_dereplicated_Eukaryote_unknown_16

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8
Location: comp(9666..11366)

Top 3 Functional Annotations

Value Algorithm Source
RNA binding protein n=1 Tax=Thalassiosira pseudonana RepID=B8C201_THAPS similarity UNIREF
DB: UNIREF100
  • Identity: 42.7
  • Coverage: 103.0
  • Bit_score: 76
  • Evalue 7.90e-11
RNA binding protein; K13093 HIV Tat-specific factor 1 similarity KEGG
DB: KEGG
  • Identity: 42.7
  • Coverage: 103.0
  • Bit_score: 76
  • Evalue 2.50e-11
RNA binding protein {ECO:0000313|EMBL:EED91854.1}; TaxID=35128 species="Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thal similarity UNIPROT
DB: UniProtKB
  • Identity: 42.7
  • Coverage: 103.0
  • Bit_score: 76
  • Evalue 1.10e-10

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Taxonomy

Thalassiosira pseudonana → Thalassiosira → Thalassiosirales → Coscinodiscophyceae → Bacillariophyta → Eukaryota

Sequences

DNA sequence
Length: 1701
ATGCCCAATGCGACGACAGATGCGTCGATTGCAGTCTCTTCTAGCGGCGCCAGCGGCGGCGGTGCAGGTGGCATGCCCGCCGTCGCCGCCGGCCGCGGTGTGGCCGACGCCGACCTCACCCCCGAGCAGCTCGCCAAGCGCGAGCGCAACCGCGAGTCGCGCCTCCGCAAGCGCACAGCGCAGACTGCCGGCGCCGGCCCGAGCAACAGCGACAGCAACGCGGATGCAGGCAACCACAACGAACAGAACAAAGTGCTGCTGTCGGCGACACAGGGCAAGACGACGGTCTTCATCACCGGGCTGCCGGTGGTGGGCGAGGACGGCGACGAGCTGATGCCCGAAGCCGTGGCCGACTTTGCGGCGCGCGCGGGCGTGCTTAAGGTTGACGAGCTGGGGCTGCCGCGCATCAAGCTCTACCGCCACCGCGCCGGCCACGAGCGAGCCGGCCAGCTTAAGGGCGAGGCGCTCGTCTTTTACGCCAAGGCCGAGTCGGTCGACCTTGCGGTGAGCTTTCTCGACGGCCGCGAGTTTGCGCCCGGATACACCGTCGCTGTGTGCAGGGCGCAGTTCAGCGCTAAGTCCGTCCCCGTTGATGCCAACGACCACGCACACACGGGGACCGCTGCGAGCGCGAGCGCGGACGGCGACATTGACAGCGCAGCGAAGCGGGCCCGCCCCGCCGGCTCTGCAACGGTGACTGACGCCACTGCGAACAACGCTTCCGGAGCGCCCGCGCTCGTGATGAAGCGGCAGCAGAAGTCGCTGGCCGCGCGCGCACAGGCACAGGCGCTGTCGTGGGGCGGCGGCGGCGACGACGCGACGACGTACAACACCGACAGCAGCGGCAGCGCCGCCGAGGGCGGTGCGGCCGGTGCTGGCGCCGGCGGCGCTGGCAGTGCTGGCCCGGGCCCCCGCATTATTTCGCTGCTGAACGCGTACTCGCCTGACGTCGCAGTGGCGAGCGGCGACGCCGCGGCGTACTACGAGGGCGTGCGCGCGCGCGTGCGGGCGCTGGTCGAGGCCAAGTGCGGCGCGGTGGCCAAGCTCACCGTGTTTCCGGGCAACTTCGAGGGCCCCGTCGTGATCCAGTTCCGCACGGGACACGCGGCTGCGGCGTGCATTCGTCTGCTGAACAATAAGGTGGTGTCGACGATCACTGGAAACACGAATGACGACATTATTTTCACAGATGACGCTAACACAGACGTGCGCGCGACGGCAAACTCGACCGAGGGCAGTGCTACTGGTGCGAGTCATGGCGTTGTAGCGAAGCCGCTGCGCCGGCTGCGCTGTGTGTATTTCGACGGCAAGACGAACTACAAGGTCGAGAACGAGAACGAGGGGGAGGAGCAGCGGCTAAAGGCGTTTGGTGACTGGCTTGAATCGCAGCAAGACAGCAAGTCCGACATCAGCACTGCGCGTGCGAGTGCAACACAGCACCCCGACAGCTCCAGCGCCCCCACCGACTCGGTGAGTCAGGCCGAGCGTGCCTCTGGCGATGGCAACGGCAACGAGGTGCATGGCGATGATCACAACGATGCAAGCGACGACGACGACGCCCCTCTTGATCAGAAAGCTAAGCCTCCCGTTGACAGCGACGCTGCGCTGGACGCCGCGTTGCGTGCAATCGAAGAGAGGGCCGCGCGCGCCGCGAGCGTACGCGCGGACGCAGTTGCTGCGGACAGTGATGACGATATTTGA
PROTEIN sequence
Length: 567
MPNATTDASIAVSSSGASGGGAGGMPAVAAGRGVADADLTPEQLAKRERNRESRLRKRTAQTAGAGPSNSDSNADAGNHNEQNKVLLSATQGKTTVFITGLPVVGEDGDELMPEAVADFAARAGVLKVDELGLPRIKLYRHRAGHERAGQLKGEALVFYAKAESVDLAVSFLDGREFAPGYTVAVCRAQFSAKSVPVDANDHAHTGTAASASADGDIDSAAKRARPAGSATVTDATANNASGAPALVMKRQQKSLAARAQAQALSWGGGGDDATTYNTDSSGSAAEGGAAGAGAGGAGSAGPGPRIISLLNAYSPDVAVASGDAAAYYEGVRARVRALVEAKCGAVAKLTVFPGNFEGPVVIQFRTGHAAAACIRLLNNKVVSTITGNTNDDIIFTDDANTDVRATANSTEGSATGASHGVVAKPLRRLRCVYFDGKTNYKVENENEGEEQRLKAFGDWLESQQDSKSDISTARASATQHPDSSSAPTDSVSQAERASGDGNGNEVHGDDHNDASDDDDAPLDQKAKPPVDSDAALDAALRAIEERAARAASVRADAVAADSDDDI*